Gene omics information

Query gene ID	EBem06_SQ002_C05_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	89.8	EBem06_SQ002_C05_at	EBem06_SQ002_C05	-	-	4e+0	At5g55131	-	S.X.	H.G.	Please select
0.77	90.8	HVSMEm0004M18r2_at	HVSMEm0004M18r2	-	-	2e+0	At3g09970	calcineurin-like phosphoesterase family protein	S.X.	H.G.	Please select
0.73	88.7	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select
0.72	87.4	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.70	86.0	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	S.X.	H.G.	Please select
0.67	84.7	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.67	84.7	Contig21533_at	Contig21533	-	-	2e+0	At1g24000	Bet v I allergen family protein	S.X.	H.G.	Please select
0.67	84.7	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	S.X.	H.G.	Please select
0.65	81.4	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	S.X.	H.G.	Please select
0.65	81.4	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	97.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.1	96.2	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
3.8	95.7	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.7	95.5	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.7	95.5	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
3.7	95.5	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.6	95.3	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Contig14830_at	Contig14830	-	-	9e+0	At5g13780	GCN5-related N-acetyltransferase, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Contig9927_s_at	Contig9927	-	-	3e+0	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig8216_at	Contig8216	-	-	2e-1	At2g42670	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig8093_x_at	Contig8093	-	-	1e-157	At4g21710	NRPB2	C.G.	S.X.	Please select
0.01	2e+0	32	Contig8093_at	Contig8093	-	-	1e-157	At4g21710	NRPB2	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12731_at	Contig12731	-	-	2e-4	At3g59380	FTA (FARNESYLTRANSFERASE A)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11797_s_at	Contig11797	-	-	1e+1	At4g21216	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11797_at	Contig11797	-	-	1e+1	At4g21216	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9037_at	Contig9037	-	-	1e-1	At3g42310	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At5g55131	3771513	-	Encodes a defensin-like (DEFL) family protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.4242.1.A1_at	CK348448	-	-	8e-1	At1g04190	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.09	5e-32	139	Oryza sativa	Os01g0899700	AK110796.1	-	Pollen Ole e 1 allergen and extensin domaincontaining protein	8e-1	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.220950.1.S1_at	pmrna37448	hypothetical protein	-	2e+0	At3g07940	zinc finger and C2 domain protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.2958.1.A1_at	BQ162425	-	-	1e+0	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1618960_at	CF404640	hypothetical protein LOC100251117	-	3e+0	At3g58310	receptor-like protein kinase-related	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.920.1.A1_at	AI783286	-	-	7e-1	At5g16650	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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