CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID EBem05_SQ004_K20_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 98.7 EBem05_SQ004_K20_at EBem05_SQ004_K20 - - 3e+0 At2g17442 unknown protein S.X. H.G.
0.44 58.9 Contig11372_at Contig11372 - - 5e-7 At3g27100 - S.X. H.G.
0.40 53.1 Contig20472_at Contig20472 - - 1e+0 At2g35460 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.38 49.5 Contig14154_at Contig14154 - - 2e+0 At1g60320 Toll-Interleukin-Resistance (TIR) domain-containing protein S.X. H.G.
0.36 47.1 Contig4507_at Contig4507 - - 6e+0 At1g61760 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related S.X. H.G.
0.34 43.6 Contig10533_at Contig10533 - - 4e-20 At1g63800 UBC5 (ubiquitin-conjugating enzyme 5) S.X. H.G.
0.34 43.6 Contig9785_at Contig9785 - - 9e-4 At4g25620 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.33 42.6 HS08H05u_at HS08H05u - - 2e-4 At5g60460 sec61beta family protein S.X. H.G.
0.30 37.0 Contig416_x_at Contig416 - - 5e-29 At4g24190 SHD (SHEPHERD) S.X. H.G.
0.30 37.0 Contig228_s_at Contig228 - - 2e+0 At2g39805 integral membrane Yip1 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.2 99.6 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
12.6 99.4 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
9.4 99.0 GSM282029 Malting_day1_Merit_rep3 GSE11200 Expression data from malting barley seeds
9.1 98.9 GSM282028 Malting_day1_Merit_rep1 GSE11200 Expression data from malting barley seeds
8.9 98.9 GSM282027 Malting_day1_Legacy_rep2 GSE11200 Expression data from malting barley seeds
8.5 98.8 GSM238437 Embryo 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.3 98.5 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.2 98.5 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
6.6 98.2 GSM372973 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8 97.8 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e-2 36 Contig11346_at Contig11346 - - 8e-1 At1g67430 60S ribosomal protein L17 (RPL17B) C.G. S.X.
0.03 8e-2 36 Contig6844_at Contig6844 - - 9e-3 At3g17160 unknown protein C.G. S.X.
0.06 3e-1 34 HS17I13u_s_at HS17I13u - - 7e-1 At1g42480 unknown protein C.G. S.X.
0.04 3e-1 34 Contig24887_at Contig24887 - - 1e+0 At4g35650 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative C.G. S.X.
0.06 3e-1 34 HS17I13u_x_at HS17I13u - - 7e-1 At1g42480 unknown protein C.G. S.X.
0.04 3e-1 34 Contig21415_at Contig21415 - - 5e+0 At3g61980 serine protease inhibitor, Kazal-type family protein C.G. S.X.
0.02 3e-1 34 Contig14170_at Contig14170 - - 7e-1 At3g58000 VQ motif-containing protein C.G. S.X.
0.02 1e+0 32 Contig16350_at Contig16350 - - 9e-3 At3g57390 AGL18 C.G. S.X.
0.03 5e+0 30 rbaal17j15_at rbaal17j15 - - 1e+0 At5g50040 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At2g17442 3768659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.06 1e+0 34 Glycine max Gma.15443.1.S1_at BG511517 - - 7e+0 At3g09150 HY2 (ELONGATED HYPOCOTYL 2) C.G. S.X.
0.06 1e+0 34 Oryza sativa Os06g0500000 9634.m02931 - Hypothetical protein 1e+0 At2g13720 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) C.G. S.X.
0.03 9e-1 34 Populus trichocarpa PtpAffx.147551.1.A1_at CV233861 - - 3e-1 At4g24110 unknown protein C.G. S.X.
0.28 6e-100 363 Triticum aestivum TaAffx.43193.1.S1_at CD905031 - - 6e-1 At1g62480 vacuolar calcium-binding protein-related C.G. S.X.
0.04 8e-1 32 Vitis vinifera 1619271_at CB981487 hypothetical protein LOC100247619 - 1e+0 At5g56100 glycine-rich protein / oleosin C.G. S.X.
0.03 1e+0 32 Zea mays Zm.9942.1.A1_at CK368883 hypothetical protein LOC100274544 - 8e-2 At5g63740 zinc finger protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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