Gene omics information

Query gene ID	EBan01_SQ003_J01_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBan01_SQ003_J01_at	EBan01_SQ003_J01	-	-	2e-1	At2g41905	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig17376_at	Contig17376	-	-	2e+0	At5g16090	-	S.X.	H.G.	Please select
0.80	92.5	Contig9898_at	Contig9898	-	-	3e-3	At2g35780	scpl26 (serine carboxypeptidase-like 26)	S.X.	H.G.	Please select
0.80	92.5	Contig15860_at	Contig15860	-	-	1e-13	At1g34420	leucine-rich repeat family protein / protein kinase family protein	S.X.	H.G.	Please select
0.71	87.1	Contig6434_at	Contig6434	-	-	3e-9	At1g07310	C2 domain-containing protein	S.X.	H.G.	Please select
0.53	69.7	Contig9959_at	Contig9959	-	-	4e-4	At1g02840	SR1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
174.5	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
118.0	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
109.7	100.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.4	57.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.0	29.9	GSM261057	Xantha b-12 Cotrol rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
0.0	29.9	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
0.0	29.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
0.0	29.9	GSM68901	27 h control replicate 1	GSE3097	Barley1 salinity stress study
0.0	29.9	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
0.0	29.9	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	2e-18	91	Contig13705_at	Contig13705	-	-	3e-1	At2g41905	unknown protein	C.G.	S.X.	Please select
0.08	7e-6	50	Contig8178_at	Contig8178	-	-	5e-3	At2g41905	unknown protein	C.G.	S.X.	Please select
0.06	7e-3	40	Contig18564_at	Contig18564	-	-	2e-5	At2g41905	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Contig25399_at	Contig25399	-	-	6e+0	At2g40233	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig5277_s_at	Contig5277	-	-	4e-2	At3g17160	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10985_at	Contig10985	-	-	1e+1	At5g50060	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig5277_at	Contig5277	-	-	4e-2	At3g17160	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig4113_at	Contig4113	-	-	2e+0	At4g29190	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig5542_at	Contig5542	-	-	6e-4	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-1	36	Arabidopsis thaliana	At2g41905	2745590	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psHB021xC07f_at	PsAffx.psHB021xC07f	-	-	3e+0	At5g34581	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.09	5e-7	56	Oryza sativa	Os02g0718100	CB964573	-	Conserved hypothetical protein	1e-1	At5g05550	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-2	38	Populus trichocarpa	PtpAffx.57294.1.A1_at	CV231857	hypothetical protein	-	9e-1	At5g40645	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	2e-122	438	Triticum aestivum	Ta.12754.1.S1_x_at	BQ170366	-	-	2e-1	At2g41905	unknown protein	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1612996_at	CD798919	-	-	5e-2	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.09	9e-2	36	Zea mays	Zm.2034.1.S1_at	BE123271	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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