Gene omics information

Query gene ID	Contig9_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	87.4	Contig9_x_at	Contig9	-	-	3e-22	At5g59690	histone H4	S.X.	H.G.	Please select
0.64	80.9	Contig14284_at	Contig14284	-	-	4e-1	At4g28240	wound-responsive protein-related	S.X.	H.G.	Please select
0.53	69.7	Contig8394_at	Contig8394	-	-	1e-10	At5g24690	-	S.X.	H.G.	Please select
0.47	62.2	Contig24535_at	Contig24535	-	-	2e-1	At3g51220	unknown protein	S.X.	H.G.	Please select
0.45	59.3	Contig17334_at	Contig17334	-	-	3e-5	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.42	55.2	Contig11964_at	Contig11964	-	-	6e+0	At3g07680	emp24/gp25L/p24 family protein	S.X.	H.G.	Please select
0.42	55.2	Contig10849_at	Contig10849	-	-	3e-3	At5g26600	catalytic/ pyridoxal phosphate binding	S.X.	H.G.	Please select
0.41	53.9	Contig11355_s_at	Contig11355	-	-	3e-19	At5g64050	ERS (GLUTAMATE TRNA SYNTHETASE)	S.X.	H.G.	Please select
0.40	53.1	Contig11563_at	Contig11563	-	-	1e-5	At2g24120	SCA3 (SCABRA 3)	S.X.	H.G.	Please select
0.36	47.1	Contig4539_at	Contig4539	-	-	3e-10	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.6	99.8	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
20.2	99.7	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
19.2	99.7	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds
18.3	99.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
17.8	99.7	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
14.0	99.5	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
13.0	99.4	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
12.3	99.4	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds
11.7	99.3	GSM68890	3 h control replicate 2	GSE3097	Barley1 salinity stress study
10.4	99.2	GSM71148	OWB-R unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	1015	Contig9_at	Contig9	-	-	3e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.91	0	787	Contig250_at	Contig250	-	-	6e-27	At5g59690	histone H4	C.G.	S.X.	Please select
0.81	0	745	bags4n02_at	bags4n02	-	-	4e-22	At5g59690	histone H4	C.G.	S.X.	Please select
0.56	1e-165	581	Contig172_s_at	Contig172	-	-	2e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.57	2e-157	553	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.57	2e-157	553	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.48	5e-146	515	Contig316_s_at	Contig316	-	-	2e-24	At5g59970	histone H4	C.G.	S.X.	Please select
0.52	5e-143	506	Contig500_at	Contig500	-	-	4e-19	At5g59690	histone H4	C.G.	S.X.	Please select
0.51	5e-140	496	Contig131_at	Contig131	-	-	1e-21	At5g59690	histone H4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	3e-22	105	Arabidopsis thaliana	At5g59690	836090	histone H4	F:DNA binding;P:nucleosome assembly;C:thylakoid;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.57	2e-86	319	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.58	2e-127	456	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	2e-6	54	Populus trichocarpa	PtpAffx.4633.2.S1_at	CA823688	-	-	9e-47	At1g07820	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	2e-178	624	Triticum aestivum	Ta.10329.33.S1_x_at	CA728230	-	-	9e-26	At5g59690	histone H4	C.G.	S.X.	Please select
0.46	2e-17	87	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select
0.50	1e-124	444	Zea mays	Zm.6721.9.A1_a_at	BM380489	Histone H4	-	6e-18	At5g59970	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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