Gene omics information

Query gene ID	Contig998_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig998_x_at	Contig998	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.67	84.7	Contig998_s_at	Contig998	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.50	66.9	HW02O09u_s_at	HW02O09u	-	-	5e-1	At5g09510	40S ribosomal protein S15 (RPS15D)	S.X.	H.G.	Please select
0.50	66.9	Contig8001_at	Contig8001	-	-	4e-12	At5g38820	amino acid transporter family protein	S.X.	H.G.	Please select
0.18	18.2	Contig14542_at	Contig14542	-	-	4e-23	At1g69830	AMY3 (ALPHA-AMYLASE-LIKE 3)	S.X.	H.G.	Please select
0.09	7.4	HVSMEg0015J02r2_s_at	HVSMEg0015J02r2	-	-	2e-1	At1g10060	branched-chain amino acid aminotransferase 1 / branched-chain amino acid transaminase 1 (BCAT1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.4	99.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
24.3	99.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
10.5	99.2	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.9	98.9	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.3	98.1	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.3	98.1	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
5.2	97.4	GSM68901	27 h control replicate 1	GSE3097	Barley1 salinity stress study
4.7	96.9	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1185	Contig998_s_at	Contig998	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.29	6e-78	289	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.38	1e-76	286	Contig873_s_at	Contig873	-	-	2e-121	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.58	3e-70	264	Contig319_at	Contig319	-	-	2e-48	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.39	5e-63	240	HVSMEl0011L15f2_s_at	HVSMEl0011L15f2	-	-	4e-2	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.36	2e-28	125	Contig44_s_at	Contig44	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.36	2e-28	125	Contig44_at	Contig44	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.39	5e-26	117	HVSMEh0081E03r2_at	HVSMEh0081E03r2	-	-	2e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.20	7e-13	73	HV12F18u_x_at	HV12F18u	-	-	1e-8	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	3e-23	109	Arabidopsis thaliana	At5g02500	831020	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	encodes a member of heat shock protein 70 family.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	2e-6	54	Glycine max	GmaAffx.497.1.S1_at	CA784527	-	-	4e-78	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.53	7e-84	311	Oryza sativa	Os.38581.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	5e-10	65	Populus trichocarpa	PtpAffx.249.167.S1_at	CV229731	hypothetical protein	-	4e-13	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	1e-80	299	Triticum aestivum	Ta.23807.9.S1_x_at	BJ318634	-	-	2e-87	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.22	9e-5	46	Vitis vinifera	1621357_s_at	CF518673	similar to HSC70-1 (heat shock cognate 70 kDa protein 1); ATP binding	-	5e-153	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	C.G.	S.X.	Please select
0.45	1e-81	301	Zea mays	Zm.12227.1.S1_at	AY104350.1	heat shock cognate 70 kDa protein 2	-	2e-53	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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