Gene omics information

Query gene ID Contig9988_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8394.0Contig9988_atContig9988--2e-13At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeS.X.H.G.
0.6077.3HA02d18r_atHA02d18r--1e+0At5g13250unknown proteinS.X.H.G.
0.4458.9Contig10514_atContig10514--1e-2At5g67360ARA12S.X.H.G.
0.3342.6Contig10785_atContig10785--6e-8At2g20810GAUT10 (GALACTURONOSYLTRANSFERASE 10)S.X.H.G.
0.1514.1Contig9065_atContig9065--4e-77At5g22330RIN1 (RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1)S.X.H.G.
0.097.4Contig8311_atContig8311--5e-15At1g65430zinc finger protein-relatedS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.299.8GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.699.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
12.599.4GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
12.299.4GSM440972Stressed awn_Rep1GSE17669Gene expression in the barley spike during drought stress
12.099.3GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.599.3GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stress
11.399.3GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.199.1GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.398.8GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.398.1GSM261061Xantha b-12 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-757Contig10937_atContig10937--3e-10At1g20490AMP-dependent synthetase and ligase family proteinC.G.S.X.
0.024e-136HD01G16w_atHD01G16w--5e+0At5g23212-C.G.S.X.
0.024e-136HT09D15r_s_atHT09D15r--3e+0At5g46730glycine-rich proteinC.G.S.X.
0.024e-136Contig16799_s_atContig16799--2e+0At3g12480NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)C.G.S.X.
0.024e-136Contig10712_atContig10712--2e+0At1g12090ELP (EXTENSIN-LIKE PROTEIN)C.G.S.X.
0.011e+034Contig7590_atContig7590--7e-1At1g55580LAS (Lateral Suppressor)C.G.S.X.
0.011e+0341200459_Reg_88-1740_at1200459_Reg_88-1740--8e-1At5g41040transferase family proteinC.G.S.X.
0.011e+034Contig7098_atContig7098--1e-2At1g56360PAP6 (PURPLE ACID PHOSPHATASE 6)C.G.S.X.
0.021e+034HS07P07u_atHS07P07u--4e+0At5g48945LCR46 (Low-molecular-weight cysteine-rich 46)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.112e-1377Arabidopsis thalianaAt4g051608258644-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeEncodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.---C.G.S.X.
0.101e-965Glycine maxGma.17493.1.S1_s_atBM568216--4e-35At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.516e-145515Oryza sativaOsAffx.12744.1.S1_at---0C.G.S.X.
0.083e-1067Populus trichocarpaPtp.7231.1.A1_atCV2757034-coumarate-coa ligase-1e-11At4g051604-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putativeC.G.S.X.
0.521e-125450Triticum aestivumTaAffx.106960.1.S1_atCD932951--2e-2At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
0.021e-240Vitis vinifera1613120_atCF404918hypothetical LOC100248029-5e-3At1g18810phytochrome kinase substrate-relatedC.G.S.X.
0.022e-240Zea maysZm.11611.1.A1_atBM379298hypothetical protein LOC100192942-5e+0At1g0740017.8 kDa class I heat shock protein (HSP17.8-CI)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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