CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9975_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig9975_at Contig9975 - - 1e+0 At1g27435 unknown protein S.X. H.G.
0.55 72.0 Contig9101_s_at Contig9101 - - 7e+0 At5g23930 mitochondrial transcription termination factor-related / mTERF-related S.X. H.G.
0.53 69.7 Contig10972_at Contig10972 - - 1e-5 At1g32500 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) S.X. H.G.
0.50 66.9 Contig8340_at Contig8340 - - 8e-3 At2g41190 amino acid transporter family protein S.X. H.G.
0.50 66.9 Contig10324_at Contig10324 - - 5e-33 At4g21800 QQT2 (quatre-quart2) S.X. H.G.
0.40 53.1 Contig11287_s_at Contig11287 - - 1e+0 At5g15960 KIN1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.0 98.9 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.8 98.6 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.0 97.2 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.7 96.9 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
4.6 96.8 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
4.2 96.3 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.9 95.8 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9 95.8 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-2 38 Contig3713_s_at Contig3713 - - 3e-10 At4g33510 DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) C.G. S.X.
0.04 2e-1 36 HVSMEb0017O13f_at HVSMEb0017O13f - - 5e-1 At5g45940 atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11) C.G. S.X.
0.01 2e-1 36 Contig6530_at Contig6530 - - 4e+0 At3g46090 ZAT7 C.G. S.X.
0.03 6e-1 34 HC105D07_T3_at HC105D07_T3 - - 3e-1 At5g05500 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.02 6e-1 34 Contig2949_s_at Contig2949 - - 1e-21 At3g55800 SBPASE (sedoheptulose-bisphosphatase) C.G. S.X.
0.03 6e-1 34 Contig15818_at Contig15818 - - 4e-1 At3g19290 ABF4 (ABRE BINDING FACTOR 4) C.G. S.X.
0.02 6e-1 34 Contig13096_at Contig13096 - - 3e-9 At1g14360 UTR3 (UDP-GALACTOSE TRANSPORTER 3) C.G. S.X.
0.02 6e-1 34 Contig2669_at Contig2669 - - 8e-13 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) C.G. S.X.
0.01 2e+0 32 Contig3608_at Contig3608 - - 7e-20 At3g47520 MDH (MALATE DEHYDROGENASE) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At1g27435 839634 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.06 2e-3 44 Glycine max GmaAffx.68341.1.S1_at BF423457 - - 2e-5 At1g27435 unknown protein C.G. S.X.
0.24 2e-56 220 Oryza sativa Os12g0477600 AK099534.1 - Conserved hypothetical protein 2e-5 At1g27435 unknown protein C.G. S.X.
0.06 1e-1 38 Populus trichocarpa Ptp.6852.1.S1_s_at CV232726 hypothetical protein - 1e-9 At1g27435 unknown protein C.G. S.X.
0.83 0 771 Triticum aestivum Ta.4005.1.S1_at CA635026 - - 3e-1 At2g05630 autophagy 8d (APG8d) C.G. S.X.
0.05 1e-4 46 Vitis vinifera 1612794_at CB975253 hypothetical protein LOC100264285 - 3e-4 At1g27435 unknown protein C.G. S.X.
0.21 6e-47 186 Zea mays Zm.13777.1.A1_at CK347797 - - 8e-8 At1g27435 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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