CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9946_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 88.7 Contig9946_at Contig9946 - - 8e+0 At5g12840 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) S.X. H.G.
0.60 77.3 HA22E11r_s_at HA22E11r - - 3e+0 At3g44755 unknown protein S.X. H.G.
0.55 72.0 Contig10282_at Contig10282 - - 2e-11 At5g58270 STA1 (STARIK 1) S.X. H.G.
0.44 58.9 Contig14457_at Contig14457 - - 6e-3 At2g44525 unknown protein S.X. H.G.
0.36 47.1 Contig11557_at Contig11557 - - 2e+0 At5g27860 unknown protein S.X. H.G.
0.17 16.9 Contig25265_at Contig25265 - - 1e+0 At3g23230 ethylene-responsive factor, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.2 99.1 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.2 99.1 GSM146374 Golden Promise shoot Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.7 99.0 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.6 99.0 GSM146370 Golden Promise shoot Control, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.1 98.9 GSM146372 Golden Promise shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.6 98.8 GSM146378 Maythorpe shoot Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.3 98.8 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.1 98.7 GSM146377 Maythorpe shoot Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.3 98.5 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.8 98.3 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 1e-132 472 Contig9944_s_at Contig9944 - - 4e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) C.G. S.X.
0.58 1e-132 472 Contig9944_at Contig9944 - - 4e+0 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) C.G. S.X.
0.33 2e-35 149 Contig9190_at Contig9190 - - 2e+0 At1g53950 ubiquitin family protein C.G. S.X.
0.17 7e-11 67 Contig12071_at Contig12071 - - 6e-1 At5g60360 AALP (Arabidopsis aleurain-like protease) C.G. S.X.
0.04 3e-7 56 Contig2456_at Contig2456 - - 7e+0 At3g06019 unknown protein C.G. S.X.
0.04 3e-4 46 Contig6333_at Contig6333 - - 5e+0 At4g19390 - C.G. S.X.
0.01 1e-3 44 Contig1846_s_at Contig1846 - - 9e-29 At4g35090 CAT2 (CATALASE 2) C.G. S.X.
0.02 1e-3 44 Contig9075_s_at Contig9075 - - 1e-1 At5g59990 - C.G. S.X.
0.03 1e-3 44 Contig2455_at Contig2455 - - 2e+0 At5g15330 SPX4 (SPX DOMAIN GENE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At5g12840 831124 NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues. - - - C.G. S.X.
0.03 1e-2 42 Glycine max Gma.8690.1.S1_at BE823711 - - 1e+0 At3g50890 AtHB28 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 28) C.G. S.X.
0.59 0 682 Oryza sativa Os03g0135100 AK059955.1 - Glutathione S-transferase GSTF15 5e-1 At1g02540 unknown protein C.G. S.X.
0.03 7e-1 36 Populus trichocarpa PtpAffx.222821.1.S1_at pmrna40489 hypothetical protein - 2e+1 At5g59310 LTP4 (LIPID TRANSFER PROTEIN 4) C.G. S.X.
0.79 0 1178 Triticum aestivum Ta.3628.2.S1_x_at CA645835 - - 2e+0 At1g73510 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1613728_at CF513606 hypothetical protein LOC100243984 - 1e+0 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.55 4e-157 553 Zea mays Zm.543.1.S1_at AF244678.1 glutathione transferase13 - 2e+0 At1g72210 basic helix-loop-helix (bHLH) family protein (bHLH096) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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