Gene omics information

Query gene ID	Contig9944_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig9944_s_at	Contig9944	-	-	4e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	S.X.	H.G.	Please select
0.40	53.1	Contig661_at	Contig661	-	-	4e-23	At2g39390	60S ribosomal protein L35 (RPL35B)	S.X.	H.G.	Please select
0.35	45.1	HV10J10u_at	HV10J10u	-	-	2e-4	At2g24200	cytosol aminopeptidase	S.X.	H.G.	Please select
0.33	42.6	Contig5399_at	Contig5399	-	-	4e-27	At2g20860	LIP1 (LIPOIC ACID SYNTHASE 1)	S.X.	H.G.	Please select
0.30	37.0	Contig10432_at	Contig10432	-	-	2e-29	At3g60750	transketolase, putative	S.X.	H.G.	Please select
0.17	16.9	Contig12269_s_at	Contig12269	-	-	8e-10	At4g30850	HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.9	99.5	GSM146372	Golden Promise shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.0	99.3	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.1	99.2	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.9	99.2	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.6	99.0	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.3	99.0	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
9.3	99.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.2	99.0	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
9.1	98.9	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.8	98.9	GSM68891	3 h control replicate 3	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	948	Contig9944_at	Contig9944	-	-	4e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	C.G.	S.X.	Please select
0.58	6e-133	472	Contig9946_at	Contig9946	-	-	8e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	C.G.	S.X.	Please select
0.13	3e-5	48	Contig9190_at	Contig9190	-	-	2e+0	At1g53950	ubiquitin family protein	C.G.	S.X.	Please select
0.02	5e-4	44	Contig1846_s_at	Contig1846	-	-	9e-29	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.03	5e-4	44	Contig9075_s_at	Contig9075	-	-	1e-1	At5g59990	-	C.G.	S.X.	Please select
0.02	5e-4	44	Contig1846_at	Contig1846	-	-	9e-29	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.02	2e-3	42	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	C.G.	S.X.	Please select
0.04	2e-3	42	Contig24499_at	Contig24499	-	-	4e+0	At3g03870	unknown protein	C.G.	S.X.	Please select
0.04	2e-3	42	HVSMEc0009P17f_s_at	HVSMEc0009P17f	-	-	1e-2	At3g10280	KCS14 (3-KETOACYL-COA SYNTHASE 14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	32	Arabidopsis thaliana	At2g36890	818262	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	"Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. "	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.psZG007xK19f_at	PsAffx.psZG007xK19f	-	-	9e-7	At4g31420	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.24	7e-34	145	Oryza sativa	Os03g0135100	AK059955.1	-	Glutathione S-transferase GSTF15	5e-1	At1g02540	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.125638.1.A1_at	DN488614	-	-	9e-1	At1g51080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	3e-90	331	Triticum aestivum	Ta.3628.1.S1_at	CF133144	-	-	2e+0	At1g73510	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Vitis vinifera	1614394_x_at	CF206363.1	-	-	6e+0	At5g48657	defense protein-related	C.G.	S.X.	Please select
0.24	9e-21	99	Zea mays	Zm.543.1.S1_at	AF244678.1	glutathione transferase13	-	2e+0	At1g72210	basic helix-loop-helix (bHLH) family protein (bHLH096)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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