Gene omics information

Query gene ID	Contig9902_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	74.9	Contig9902_at	Contig9902	-	-	2e+0	At5g35170	adenylate kinase family protein	S.X.	H.G.	Please select
0.71	87.1	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.67	84.7	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.57	74.9	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.55	72.0	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.48	63.2	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	S.X.	H.G.	Please select
0.44	58.9	Contig6826_s_at	Contig6826	-	-	8e-1	At2g15535	LCR10 (Low-molecular-weight cysteine-rich 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	99.3	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
11.7	99.3	GSM215731	gibberellin treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
8.4	98.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.0	98.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
7.5	98.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM160744	drought control rep2	GSE6990	Barley drought stress
5.1	97.3	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.0	97.2	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
4.6	96.8	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.4	96.6	GSM281750	Genotype: Morex - rep3	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Contig17801_at	Contig17801	-	-	1e+0	At4g36620	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig17800_s_at	Contig17800	-	-	8e-2	At5g25750	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig2439_at	Contig2439	-	-	4e-8	At1g07140	SIRANBP	C.G.	S.X.	Please select
0.01	3e-1	36	Contig20980_at	Contig20980	-	-	3e-3	At2g30350	endo/excinuclease amino terminal domain-containing protein	C.G.	S.X.	Please select
0.02	3e-1	36	HZ56G07r_s_at	HZ56G07r	-	-	2e+0	At3g01030	nucleic acid binding / transcription factor/ zinc ion binding	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8595_at	Contig8595	-	-	2e-13	At3g14930	HEME1	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6958_s_at	Contig6958	-	-	8e-5	At4g23190	CRK11 (CYSTEINE-RICH RLK11)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4153_at	Contig4153	-	-	5e-15	At4g29130	HXK1 (HEXOKINASE 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11366_at	Contig11366	-	-	3e-33	At4g21450	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g35170	833471	adenylate kinase family protein	F:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, phosphotransferase activity, phosphate group as acceptor, adenylate kinase activity, ATP binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	9e-4	46	Glycine max	GmaAffx.71174.1.S1_at	AW423975	-	-	3e-21	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please select
0.45	4e-176	619	Oryza sativa	Os08g0109300	AK066688.1	-	Adenylate kinase, chloroplast (EC 2.7.4.3)(ATP-AMP transphosphorylase)	8e-10	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	1e-15	85	Populus trichocarpa	Ptp.3804.1.S1_at	CV261647	hypothetical protein	-	4e-61	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.81	0	1304	Triticum aestivum	Ta.19971.1.S1_at	CK208496	-	-	1e-5	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please select
0.11	9e-16	83	Vitis vinifera	1610128_at	CF212466	-	-	6e-23	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please select
0.42	5e-129	460	Zea mays	Zm.5833.1.A1_at	CA398697	adenylate kinase	-	1e-2	At5g47840	AMK2 (Adenosine monophosphate kinase)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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