Gene omics information

Query gene ID	Contig9862_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig9862_at	Contig9862	-	-	1e+0	At1g38630	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig14822_at	Contig14822	-	-	2e+0	At1g02780	emb2386 (embryo defective 2386)	S.X.	H.G.	Please select
0.36	47.1	Contig7318_at	Contig7318	-	-	9e-32	At4g34900	XDH2 (XXANTHINE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.29	35.5	Contig11015_at	Contig11015	-	-	1e-29	At4g14147	ARPC4	S.X.	H.G.	Please select
0.25	28.9	HVSMEi0006K11r2_s_at	HVSMEi0006K11r2	-	-	6e-2	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	S.X.	H.G.	Please select
0.21	22.6	Contig8884_at	Contig8884	-	-	3e-3	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	S.X.	H.G.	Please select
0.16	15.3	Contig1748_s_at	Contig1748	-	-	6e+0	At2g35605	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.9	99.4	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.3	99.4	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.2	99.4	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.1	99.3	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.4	99.3	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.0	99.2	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.9	99.2	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.6	99.2	GSM398272	HS41-1_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.2	99.1	GSM398271	HS41-1_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.8	99.1	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-14	77	Contig11289_at	Contig11289	-	-	7e-1	At4g26340	F-box family protein	C.G.	S.X.	Please select
0.12	7e-13	73	HB04L12r_at	HB04L12r	-	-	4e+0	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	C.G.	S.X.	Please select
0.18	3e-12	71	HU11J14u_at	HU11J14u	-	-	4e+0	At5g19900	PRLI-interacting factor, putative	C.G.	S.X.	Please select
0.06	2e-10	65	Contig6720_at	Contig6720	-	-	6e-1	At5g08150	unknown protein	C.G.	S.X.	Please select
0.10	2e-10	65	EBem04_SQ004_I19_at	EBem04_SQ004_I19	-	-	7e-1	At2g15960	unknown protein	C.G.	S.X.	Please select
0.03	2e-10	65	Contig2908_at	Contig2908	-	-	5e-36	At5g14040	mitochondrial phosphate transporter	C.G.	S.X.	Please select
0.07	7e-10	63	Contig12703_at	Contig12703	-	-	1e-4	At5g09230	SRT2 (SIRTUIN 2)	C.G.	S.X.	Please select
0.07	1e-8	59	Contig6543_s_at	Contig6543	-	-	3e-1	At5g64920	CIP8 (COP1-INTERACTING PROTEIN 8)	C.G.	S.X.	Please select
0.04	2e-7	56	Contig4624_at	Contig4624	-	-	1e-5	At1g70310	SPDS2 (spermidine synthase 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+0	34	Arabidopsis thaliana	At1g38630	840688	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.84094.1.A1_at	CD403899	-	-	1e+1	At4g35655	-	C.G.	S.X.	Please select
0.10	3e-18	93	Oryza sativa	Os04g0578200	AK073300.1	-	Conserved hypothetical protein	6e-1	At3g12977	DNA binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-1	36	Populus trichocarpa	PtpAffx.94761.1.A1_s_at	CV272497	hypothetical protein	-	5e-19	At2g46100	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	2e-9	63	Triticum aestivum	TaAffx.39302.1.A1_at	BG909701	-	-	1e+1	At5g53860	emb2737 (embryo defective 2737)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1618939_at	CF405354	hypothetical protein LOC100242502	-	1e-3	At2g47970	NPL4 family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zea mays	Zm.2383.1.A1_at	BG842498	hypothetical protein LOC100275670	-	5e+0	At2g13820	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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