CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig982_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig982_at Contig982 - - 2e-1 At5g20520 WAV2 (WAVY GROWTH 2) S.X. H.G.
0.80 92.5 HVSMEg0015A14r2_at HVSMEg0015A14r2 - - 1e+0 At5g03905 hesB-like domain-containing protein S.X. H.G.
0.60 77.3 Contig21303_at Contig21303 - - 2e+0 At2g14890 AGP9 (ARABINOGALACTAN PROTEIN 9) S.X. H.G.
0.40 53.1 HP01O07w_at HP01O07w - - 3e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) S.X. H.G.
0.33 42.6 Contig2636_s_at Contig2636 - - 7e-7 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative S.X. H.G.
0.32 40.3 HVSMEb0005F19r2_at HVSMEb0005F19r2 - - 3e-1 At4g09010 APX4 (ASCORBATE PEROXIDASE 4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.9 97.9 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9 97.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1 96.2 GSM372969 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9 95.8 GSM372972 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.5 95.1 GSM372953 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.5 95.1 GSM372971 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM372960 genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4 94.8 GSM372973 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.3 94.6 GSM372968 genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 4e-75 282 HM12J12r_at HM12J12r - - 3e+0 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.10 9e-64 244 Contig407_x_at Contig407 - - 9e-2 At4g14110 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) C.G. S.X.
0.12 6e-62 238 Contig558_s_at Contig558 - - 1e+1 At2g31335 unknown protein C.G. S.X.
0.05 5e-16 85 EBem10_SQ002_L14_s_at EBem10_SQ002_L14 - - 5e+0 At2g31335 unknown protein C.G. S.X.
0.02 3e-2 40 Contig3208_at Contig3208 - - 1e-3 At5g51610 ribosomal protein L11 family protein C.G. S.X.
0.02 1e-1 38 Contig22861_at Contig22861 - - 7e+0 At3g59880 unknown protein C.G. S.X.
0.01 1e-1 38 Contig6939_at Contig6939 - - 2e-1 At5g16030 unknown protein C.G. S.X.
0.01 4e-1 36 Contig5705_at Contig5705 - - 4e-2 At5g06570 hydrolase C.G. S.X.
0.01 2e+0 34 Contig20848_at Contig20848 - - 1e-3 At2g35960 NHL12 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-1 38 Arabidopsis thaliana At5g20520 832174 WAV2 (WAVY GROWTH 2) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch). - - - C.G. S.X.
0.10 1e-6 56 Glycine max Gma.13971.1.S1_at CD412065 - - 8e-22 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.57 0 1126 Oryza sativa Os07g0608300 AK073927.1 - Esterase/lipase/thioesterase domain containingprotein 1e-2 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.12 1e-9 65 Populus trichocarpa Ptp.4724.1.S1_at CX182386 hypothetical protein - 6e-53 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.47 0 795 Triticum aestivum Ta.7422.2.S1_a_at BJ319517 - - 7e-2 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1615417_at CB348753 - - 1e+0 At2g45240 MAP1A (METHIONINE AMINOPEPTIDASE 1A) C.G. S.X.
0.56 0 934 Zea mays Zm.12534.1.A1_at CF628471 hypothetical protein LOC100192944 - 5e-5 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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