Gene omics information

Query gene ID	Contig9787_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig9787_at	Contig9787	-	-	4e+0	At2g27505	-	S.X.	H.G.	Please select
0.67	84.7	Contig16932_at	Contig16932	-	-	6e-1	At3g17030	-	S.X.	H.G.	Please select
0.67	84.7	Contig4873_s_at	Contig4873	-	-	4e+0	At5g17847	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig8323_at	Contig8323	-	-	3e+0	Atmg00890	-	S.X.	H.G.	Please select
0.36	47.1	Contig8382_at	Contig8382	-	-	3e-2	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please select
0.19	19.6	Contig3967_at	Contig3967	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	96.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.7	95.5	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
3.5	95.1	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
3.1	94.1	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.1	94.1	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.0	93.8	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-14	79	Contig12732_at	Contig12732	-	-	3e+0	At1g62305	unknown protein	C.G.	S.X.	Please select
0.02	2e-3	44	HB08N07r_at	HB08N07r	-	-	2e-1	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select
0.02	7e-3	42	Contig18594_at	Contig18594	-	-	1e-1	At4g28250	ATEXPB3 (ARABIDOPSIS THALIANA EXPANSIN B3)	C.G.	S.X.	Please select
0.01	7e-3	42	Contig17924_at	Contig17924	-	-	2e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.01	7e-3	42	Contig3713_s_at	Contig3713	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig20981_at	Contig20981	-	-	1e+0	At5g04600	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig15964_at	Contig15964	-	-	1e-5	At4g33020	ZIP9	C.G.	S.X.	Please select
0.01	3e-2	40	Contig13319_at	Contig13319	-	-	3e+0	At3g23172	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig12289_at	Contig12289	-	-	4e-1	At1g63105	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Arabidopsis thaliana	At2g27505	817296	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	36	Glycine max	Gma.135.1.S1_at	AJ006308.1	tyrosine phosphatase 1	-	3e-34	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please select
0.43	5e-78	293	Oryza sativa	Os12g0174800	AK064263.1	-	Tyrosine specific protein phosphatase familyprotein	1e-2	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	42	Populus trichocarpa	PtpAffx.21888.1.A1_a_at	CK096334	hypothetical protein	-	2e-24	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	0	1824	Triticum aestivum	Ta.28403.1.S1_x_at	CK192904	-	-	4e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	C.G.	S.X.	Please select
0.03	7e-5	48	Vitis vinifera	1614819_at	CF513559	hypothetical protein LOC100259847	-	2e-11	At1g71860	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1)	C.G.	S.X.	Please select
0.32	2e-43	176	Zea mays	Zm.17542.1.A1_at	CK369401	receptor-type tyrosine-protein phosphatase S	-	3e+0	At2g34720	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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