Gene omics information

Query gene ID	Contig9752_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig10592_at	Contig10592	-	-	1e-2	At5g26180	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select
0.55	72.0	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	S.X.	H.G.	Please select
0.50	66.9	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	S.X.	H.G.	Please select
0.35	45.1	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.33	42.6	Contig16432_at	Contig16432	-	-	1e-2	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.5	99.8	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
20.4	99.7	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
20.3	99.7	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
20.2	99.7	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.4	99.4	GSM398278	Moroc9-75_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.3	99.4	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.1	99.2	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.1	99.1	GSM398277	Moroc9-75_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.7	99.0	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.3	99.0	GSM398261	HS41-1_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Contig11326_at	Contig11326	-	-	2e+0	At3g61210	embryo-abundant protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	Contig5472_at	Contig5472	-	-	2e-58	At5g46210	CUL4 (CULLIN4)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4567_at	Contig4567	-	-	2e-10	At3g26710	CCB1 (COFACTOR ASSEMBLY OF COMPLEX C)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig8945_at	Contig8945	-	-	7e-1	At4g11250	AGL52	C.G.	S.X.	Please select
0.01	5e+0	32	Contig12328_at	Contig12328	-	-	4e-17	At4g30260	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig10295_at	Contig10295	-	-	4e-1	At3g53620	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	C.G.	S.X.	Please select
0.02	5e+0	32	HVSMEm0005B12r2_at	HVSMEm0005B12r2	-	-	3e-1	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig18464_at	Contig18464	-	-	2e+0	At3g18450	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Contig13951_at	Contig13951	-	-	7e+0	At5g18404	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At2g11651	6241262	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-3	44	Glycine max	Gma.1174.1.S1_at	CD397033	-	-	2e-13	At1g62250	unknown protein	C.G.	S.X.	Please select
0.54	1e-170	601	Oryza sativa	Os03g0744700	AK071178.1	-	Conserved hypothetical protein	4e-2	At1g62250	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Populus trichocarpa	PtpAffx.7582.2.A1_at	DN487290	-	-	4e-18	At3g24830	60S ribosomal protein L13A (RPL13aB)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	4e-61	236	Triticum aestivum	Ta.15463.1.S1_at	CA484879	-	-	2e+0	At2g11651	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Vitis vinifera	1622837_s_at	CB345356	similar to putative p115-like protein	-	4e-2	At1g28070	-	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.17631.1.A1_at	CK369039	-	-	5e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage