CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9706_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 75.8 Contig9706_at Contig9706 - - 2e-4 At2g33610 ATSWI3B (SWITCH SUBUNIT 3) S.X. H.G.
0.57 74.9 Contig7107_at Contig7107 - - 2e-1 At2g45480 AtGRF9 (GROWTH-REGULATING FACTOR 9) S.X. H.G.
0.40 53.1 Contig6829_at Contig6829 - - 2e-10 At1g18640 - S.X. H.G.
0.35 45.1 Contig20343_at Contig20343 - - 3e-1 At2g20805 - S.X. H.G.
0.33 42.6 Contig5839_at Contig5839 - - 4e-1 At5g46490 disease resistance protein (TIR-NBS class), putative S.X. H.G.
0.33 42.6 HI05P18u_s_at HI05P18u - - 4e+0 At3g50695 unknown protein S.X. H.G.
0.26 30.4 Contig11731_at Contig11731 - - 2e-10 At3g02450 cell division protein ftsH, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.9 99.2 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
8.9 98.9 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
8.2 98.7 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
6.8 98.3 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.6 97.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.3 97.4 GSM363465 5 mM B(OH)3 treatment (5B) - rep3 GSE14521 Late response to boron toxicity in barley leaves
5.2 97.4 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.9 97.1 GSM363467 10 mM B(OH)3 treatment (10B) - rep2 GSE14521 Late response to boron toxicity in barley leaves
4.9 97.1 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-2 40 EBro08_SQ003_C15_at EBro08_SQ003_C15 - - 2e-2 At3g21850 ASK9 (ARABIDOPSIS SKP1-LIKE 9) C.G. S.X.
0.01 1e-1 38 Contig16581_at Contig16581 - - 1e-12 At1g06770 DRIP1 (DREB2A-INTERACTING PROTEIN 1) C.G. S.X.
0.01 1e-1 38 Contig2857_at Contig2857 - - 4e-3 At1g66680 AR401 C.G. S.X.
0.01 4e-1 36 Contig8499_at Contig8499 - - 3e-7 At1g03280 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein C.G. S.X.
0.01 4e-1 36 Contig14475_s_at Contig14475 - - 3e-2 At4g12050 DNA-binding protein-related C.G. S.X.
0.01 4e-1 36 Contig21900_at Contig21900 - - 1e+0 At1g51410 cinnamyl-alcohol dehydrogenase, putative (CAD) C.G. S.X.
0.01 4e-1 36 Contig11282_at Contig11282 - - 3e-2 At5g52060 ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1) C.G. S.X.
0.02 4e-1 36 Contig9370_at Contig9370 - - 2e-1 At1g78410 VQ motif-containing protein C.G. S.X.
0.01 2e+0 34 HZ49F08r_at HZ49F08r - - 4e+0 At4g00893 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-4 48 Arabidopsis thaliana At2g33610 817927 ATSWI3B (SWITCH SUBUNIT 3) Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously. - - - C.G. S.X.
0.03 6e-9 63 Glycine max GmaAffx.4127.2.S1_at BQ296202 - - 2e-19 At2g33610 ATSWI3B (SWITCH SUBUNIT 3) C.G. S.X.
0.43 5e-152 539 Oryza sativa Os02g0194000 AK064096.1 - Myb, DNA-binding domain containing protein 7e-1 At4g20300 unknown protein C.G. S.X.
0.08 9e-5 50 Populus trichocarpa PtpAffx.201521.1.S1_at pmrna3000 chromatin remodeling complex subunit - 9e-25 At2g33610 ATSWI3B (SWITCH SUBUNIT 3) C.G. S.X.
0.82 0 1758 Triticum aestivum Ta.5005.1.S1_x_at BJ275308 - - 9e-1 At2g33610 ATSWI3B (SWITCH SUBUNIT 3) C.G. S.X.
0.01 2e-2 40 Vitis vinifera 1615352_s_at CB972821 hypothetical protein LOC100248779 - 5e-138 At4g13930 SHM4 (serine hydroxymethyltransferase 4) C.G. S.X.
0.20 6e-28 125 Zea mays Zm.13328.1.S1_at CO524823 hypothetical protein LOC100273414 - 2e+0 At4g01575 serine protease inhibitor, Kazal-type family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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