Gene omics information

Query gene ID	Contig9703_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig9703_at	Contig9703	-	-	3e+0	At2g37200	integral membrane protein, putative	S.X.	H.G.	Please select
0.60	77.3	Contig17513_at	Contig17513	-	-	4e-4	At5g06600	UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)	S.X.	H.G.	Please select
0.55	72.0	Contig17523_at	Contig17523	-	-	7e-2	At4g08230	glycine-rich protein	S.X.	H.G.	Please select
0.55	72.0	Contig4591_at	Contig4591	-	-	4e-2	At4g22890	PGR5-LIKE A	S.X.	H.G.	Please select
0.50	66.9	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
229.5	100.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
45.4	99.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
21.3	99.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
1.5	84.4	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
1.2	80.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
1.2	80.2	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
1.1	78.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	38	Contig4283_at	Contig4283	-	-	9e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	C.G.	S.X.	Please select
0.03	4e-1	34	Contig5299_at	Contig5299	-	-	7e+0	At5g38920	nucleic acid binding / ribonuclease H	C.G.	S.X.	Please select
0.03	2e+0	32	Contig13083_at	Contig13083	-	-	2e-3	At5g05350	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	rbah55a21_s_at	rbah55a21	-	-	4e+0	At5g26840	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	HC114G08_SK_at	HC114G08_SK	-	-	6e-2	At2g45520	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	HT11C12u_s_at	HT11C12u	-	-	3e+0	At5g26840	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	30	Contig6767_s_at	Contig6767	-	-	2e-11	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	C.G.	S.X.	Please select
0.02	6e+0	30	Contig16767_at	Contig16767	-	-	2e+0	At5g65590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	6e+0	30	Contig5745_s_at	Contig5745	-	-	1e-1	At1g60870	MEE9 (maternal effect embryo arrest 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At2g37200	818297	integral membrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	PsAffx.CL216Contig1_at	PsAffx.CL216Contig1	-	-	2e+0	At1g52905	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	32	Oryza sativa	Os05g0433600	9633.m03338	-	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.153682.1.A1_s_at	CV247070	-	-	1e-1	At4g16090	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.82936.1.S1_at	CA664708	-	-	5e-2	At4g13195	CLE44 (CLAVATA3/ESR-RELATED 44)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1618199_at	CD802229	hypothetical protein LOC100247128	-	7e-8	At5g15790	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.9804.1.A1_at	CD956095	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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