CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9698_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 94.5 Contig9698_at Contig9698 - - 3e-1 At4g20390 integral membrane family protein S.X. H.G.
0.55 72.0 Contig9915_at Contig9915 - - 1e-8 At5g16750 TOZ (TORMOZEMBRYO DEFECTIVE) S.X. H.G.
0.55 72.0 S0001000015G12F1_s_at S0001000015G12F1 - - 3e+0 At1g17700 PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1) S.X. H.G.
0.52 68.3 Contig17100_at Contig17100 - - 2e+0 At3g52800 zinc finger (AN1-like) family protein S.X. H.G.
0.52 68.3 Contig25417_at Contig25417 - - 1e+0 At2g29340 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.51 67.5 Contig6910_at Contig6910 - - 9e-4 At5g43590 patatin, putative S.X. H.G.
0.45 59.3 Contig5244_at Contig5244 - - 1e-37 At5g53460 GLT1 S.X. H.G.
0.44 58.9 Contig272_s_at Contig272 - - 5e-1 At3g45230 hydroxyproline-rich glycoprotein family protein S.X. H.G.
0.42 55.2 Contig4656_at Contig4656 - - 1e-3 At5g60570 kelch repeat-containing F-box family protein S.X. H.G.
0.39 50.5 Contig8286_at Contig8286 - - 3e-2 At3g19010 oxidoreductase, 2OG-Fe(II) oxygenase family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.6 99.8 GSM238437 Embryo 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
22.8 99.8 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
21.9 99.8 GSM282020 Malting_day4_Legacy_rep 3 GSE11200 Expression data from malting barley seeds
21.8 99.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
20.1 99.7 GSM282021 Malting_day4_Legacy_rep 2 GSE11200 Expression data from malting barley seeds
19.8 99.7 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
19.7 99.7 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
16.4 99.6 GSM282022 Malting_day4_Merit_rep4 GSE11200 Expression data from malting barley seeds
15.5 99.6 GSM282024 Malting_day4_Merit_rep2 GSE11200 Expression data from malting barley seeds
15.3 99.6 GSM238438 Embryo 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 9e-6 50 Contig9925_at Contig9925 - - 8e-2 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.05 6e-4 44 HD07M18r_at HD07M18r - - 7e-1 At3g29370 unknown protein C.G. S.X.
0.02 2e-3 42 Contig2442_at Contig2442 - - 4e-15 At1g04980 ATPDIL2-2 (PDI-LIKE 2-2) C.G. S.X.
0.08 9e-3 40 HF11A03r_at HF11A03r - - 2e-1 At3g61980 serine protease inhibitor, Kazal-type family protein C.G. S.X.
0.02 9e-3 40 Contig4410_at Contig4410 - - 2e-7 At5g66680 DGL1 C.G. S.X.
0.03 4e-2 38 Contig12833_at Contig12833 - - 1e-4 At5g45040 cytochrome c6 (ATC6) C.G. S.X.
0.02 1e-1 36 Contig16505_at Contig16505 - - 8e-7 At2g19430 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 1e-1 36 Contig2403_at Contig2403 - - 8e-7 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.01 1e-1 36 Contig7451_at Contig7451 - - 1e-15 At3g51860 CAX3 (CATION EXCHANGER 3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e-1 36 Arabidopsis thaliana At4g20390 827787 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.03 2e+0 34 Glycine max PsAffx.CL145Contig2_at PsAffx.CL145Contig2 - - 1e+0 At4g34290 SWIB complex BAF60b domain-containing protein C.G. S.X.
0.10 6e-7 56 Oryza sativa Os02g0586900 AK063583.1 - Glycine rich family protein 1e+0 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.91912.1.S1_at BU875860 hypothetical protein - 2e-2 At1g01100 60S acidic ribosomal protein P1 (RPP1A) C.G. S.X.
0.59 3e-69 262 Triticum aestivum Ta.6174.1.S1_at CA635455 - - 5e+0 At5g59230 transcription factor-related C.G. S.X.
0.04 1e+0 32 Vitis vinifera 1620680_at CF516453 - - 5e+0 At5g51080 RNase H domain-containing protein C.G. S.X.
0.06 2e-3 42 Zea mays Zm.17728.1.A1_at CF631523 - - 1e+0 At3g25573 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage