Gene omics information

Query gene ID	Contig9656_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig9656_at	Contig9656	-	-	1e+0	At2g41225	unknown protein	S.X.	H.G.	Please select
0.91	98.1	HT07E22u_x_at	HT07E22u	-	-	9e-1	At4g12850	far-red impaired responsive family protein / FAR1 family protein	S.X.	H.G.	Please select
0.67	84.7	Contig17872_at	Contig17872	-	-	2e+0	At3g24730	catalytic	S.X.	H.G.	Please select
0.67	84.7	Contig4498_at	Contig4498	-	-	2e-1	At1g28290	AGP31 (arabinogalactan-protein 31)	S.X.	H.G.	Please select
0.67	84.7	Contig4499_s_at	Contig4499	-	-	4e-18	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.61	78.7	Contig4495_at	Contig4495	-	-	1e+0	At5g12235	CLE22 (CLAVATA3/ESR-RELATED 22)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.0	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.1	96.2	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.0	96.0	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.9	95.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Contig8934_at	Contig8934	-	-	2e+0	At4g23600	CORI3 (CORONATINE INDUCED 1)	C.G.	S.X.	Please select
0.01	6e-1	34	Contig5662_at	Contig5662	-	-	3e-1	At1g49975	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24694_at	Contig24694	-	-	4e-1	At4g25280	adenylate kinase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig14052_at	Contig14052	-	-	4e-10	At5g53130	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig11673_at	Contig11673	-	-	7e-8	At2g35720	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Contig17260_at	Contig17260	-	-	4e-1	At2g18530	protein kinase family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig9820_at	Contig9820	-	-	1e-8	At3g48880	F-box family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24943_at	Contig24943	-	-	3e-1	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig17181_at	Contig17181	-	-	6e-4	At5g39590	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At2g41225	6240955	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.76504.1.A1_at	BE660540	-	-	7e-2	At2g34540	unknown protein	C.G.	S.X.	Please select
0.06	3e-3	44	Oryza sativa	Os03g0352500	AK062300.1	-	Hypothetical protein	6e-1	At5g40570	surfeit locus protein 2 family protein / SURF2 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.64845.1.S1_at	BU817117	hypothetical protein	-	8e-1	At1g21925	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	1e-77	289	Triticum aestivum	Ta.4945.2.A1_at	CA629989	-	-	1e+0	At2g41225	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1621237_at	CF603521	hypothetical protein LOC100246278	-	3e-10	At5g38640	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.12573.1.A1_at	BI233467	hypothetical protein LOC100276406	-	2e+0	At3g20450	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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