Gene omics information

Query gene ID	Contig9642_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select
0.71	87.1	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	S.X.	H.G.	Please select
0.61	78.7	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.46	61.0	Contig6616_at	Contig6616	-	-	1e-57	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.46	61.0	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.44	58.9	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.1	99.9	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
28.2	99.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
24.5	99.8	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
17.1	99.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
15.5	99.6	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.3	99.5	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
13.6	99.5	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
12.3	99.4	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.7	99.3	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
10.6	99.2	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	3e-31	135	Contig7800_at	Contig7800	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.22	2e-26	119	Contig1433_at	Contig1433	-	-	2e-46	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.23	2e-26	119	Contig1437_s_at	Contig1437	-	-	4e-35	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.33	7e-23	107	Contig1430_at	Contig1430	-	-	3e-54	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.17	1e-15	83	HVSMEb0019C19f_at	HVSMEb0019C19f	-	-	6e-12	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.15	2e-14	79	HV_CEa0002D05f_s_at	HV_CEa0002D05f	-	-	4e-5	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.15	2e-14	79	HV_CEa0002D05f_x_at	HV_CEa0002D05f	-	-	4e-5	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.21	1e-12	73	Contig1431_at	Contig1431	-	-	2e-49	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.20	4e-9	61	Contig2229_at	Contig2229	-	-	1e-35	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-13	77	Arabidopsis thaliana	At4g27960	828909	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	ubiquitin conjugating enzyme	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	2e-13	77	Glycine max	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.43	3e-130	466	Oryza sativa	OsAffx.17659.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	1e-14	81	Populus trichocarpa	Ptp.4306.1.S1_at	CV225469	hypothetical protein	-	5e-78	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	0	686	Triticum aestivum	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.21	2e-12	71	Vitis vinifera	1610321_s_at	CB980394	hypothetical protein LOC100251531	-	9e-55	At1g64230	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please select
0.39	8e-115	412	Zea mays	Zm.6268.1.A1_at	BM073308	hypothetical protein LOC100192813	-	2e-3	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage