Gene omics information

Query gene ID	Contig9632_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig9632_at	Contig9632	-	-	1e-1	At1g78370	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	S.X.	H.G.	Please select
0.63	80.3	Contig12594_at	Contig12594	-	-	3e+0	At5g11990	proline-rich family protein	S.X.	H.G.	Please select
0.60	77.3	Contig10954_at	Contig10954	-	-	4e+0	At3g21175	ZML1 (ZIM-LIKE 1)	S.X.	H.G.	Please select
0.57	74.9	rbags1e22_s_at	rbags1e22	-	-	3e-1	At3g56360	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig13332_at	Contig13332	-	-	2e+0	At1g68280	thioesterase-related	S.X.	H.G.	Please select
0.32	40.3	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.5	99.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.8	99.7	GSM238425	Endosperm 48 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.7	99.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.6	99.6	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.1	99.5	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.3	99.4	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.2	99.2	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.8	98.6	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.4	98.5	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.1	98.4	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	801	HVSMEa0014H14r2_s_at	HVSMEa0014H14r2	-	-	4e+0	At4g13260	YUC2 (YUCCA2)	C.G.	S.X.	Please select
0.15	3e-22	105	Contig14387_at	Contig14387	-	-	2e+0	At3g29785	unknown protein	C.G.	S.X.	Please select
0.17	1e-21	103	Contig13901_at	Contig13901	-	-	4e-1	At1g10140	-	C.G.	S.X.	Please select
0.54	2e-20	99	Contig15282_at	Contig15282	-	-	2e+0	At2g29450	ATGSTU5 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 5)	C.G.	S.X.	Please select
0.12	2e-17	89	Contig18367_at	Contig18367	-	-	2e+0	At2g15170	-	C.G.	S.X.	Please select
0.08	2e-17	89	Contig8958_at	Contig8958	-	-	2e+0	At1g17190	ATGSTU26 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 26)	C.G.	S.X.	Please select
0.15	2e-14	79	Contig7171_s_at	Contig7171	-	-	1e-1	At2g30115	-	C.G.	S.X.	Please select
0.10	7e-14	77	Contig21640_at	Contig21640	-	-	5e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please select
0.08	6e-11	67	Contig6010_at	Contig6010	-	-	5e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At1g78370	844173	ATGSTU20 (GLUTATHIONE S-TRANSFERASE TAU 20)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	Gma.16720.1.S1_at	BQ611813	glutathione S-transferase GST 13	-	3e-4	At1g74590	GSTU10 (GLUTATHIONE S-TRANSFERASE TAU 10)	C.G.	S.X.	Please select
0.29	5e-27	123	Oryza sativa	Os.46635.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+1	32	Populus trichocarpa	PtpAffx.223736.1.S1_s_at	pmrna41890	cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// cytochrome P450 /// hypothetical protein	-	2e+0	At5g39580	peroxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	0	813	Triticum aestivum	TaAffx.1140.1.A1_at	CD884266	-	-	7e+0	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please select
0.06	1e-4	46	Vitis vinifera	1617423_at	CB969252	hypothetical protein LOC100245065	-	5e-8	At1g10360	ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)	C.G.	S.X.	Please select
0.47	7e-63	240	Zea mays	Zm.550.1.A1_at	CK827107	glutathione S-transferase GST 22	-	2e+0	At1g10360	ATGSTU18 (GLUTATHIONE S-TRANSFERASE TAU 18)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage