Gene omics information

Query gene ID	Contig9614_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig9614_at	Contig9614	-	-	3e-17	At2g17240	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig14475_s_at	Contig14475	-	-	3e-2	At4g12050	DNA-binding protein-related	S.X.	H.G.	Please select
0.50	66.9	Contig3171_at	Contig3171	-	-	7e-3	At3g15360	TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4)	S.X.	H.G.	Please select
0.38	49.5	HVSMEm0005B12r2_at	HVSMEm0005B12r2	-	-	3e-1	At3g23727	SCRL12 (SCR-Like 12)	S.X.	H.G.	Please select
0.25	28.9	Contig6337_at	Contig6337	-	-	2e+0	At3g10640	VPS60.1	S.X.	H.G.	Please select
0.17	16.9	Contig11143_at	Contig11143	-	-	3e+0	At4g14810	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.2	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.4	99.2	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.8	99.1	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.8	98.9	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.7	98.9	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.6	98.8	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
8.4	98.8	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
7.3	98.5	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.6	97.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.4	97.5	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.54	9e-130	462	HA03N08r_s_at	HA03N08r	-	-	9e+0	At5g15320	unknown protein	C.G.	S.X.	Please select
0.01	1e-2	40	Contig6034_at	Contig6034	-	-	1e-3	At5g05140	transcription elongation factor-related	C.G.	S.X.	Please select
0.02	1e-2	40	Contig3756_at	Contig3756	-	-	4e-31	At3g12860	nucleolar protein Nop56, putative	C.G.	S.X.	Please select
0.02	1e-2	40	Contig6293_at	Contig6293	-	-	5e-4	At1g77370	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	5e-2	38	Contig12125_at	Contig12125	-	-	6e+0	At3g07522	unknown protein	C.G.	S.X.	Please select
0.03	5e-2	38	Contig15667_at	Contig15667	-	-	2e+0	At3g58330	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Contig6911_at	Contig6911	-	-	7e-4	At4g29980	unknown protein	C.G.	S.X.	Please select
0.03	5e-2	38	Contig5850_at	Contig5850	-	-	2e-8	At1g67785	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig3787_at	Contig3787	-	-	6e+0	At3g32160	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	3e-17	89	Arabidopsis thaliana	At2g17240	816229	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMBPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	6e-7	56	Glycine max	GmaAffx.79852.2.S1_at	AI965552	-	-	2e-5	At2g17240	unknown protein	C.G.	S.X.	Please select
0.46	2e-130	466	Oryza sativa	Os02g0614200	AK061591.1	-	Conserved hypothetical protein	4e-10	At2g17240	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	4e-5	50	Populus trichocarpa	PtpAffx.71717.1.S1_at	CV250341	hypothetical protein	-	2e-22	At2g17240	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.89	0	920	Triticum aestivum	Ta.13349.1.S1_a_at	BQ578410	-	-	1e-10	At3g24506	unknown protein	C.G.	S.X.	Please select
0.13	9e-18	89	Vitis vinifera	1611494_at	CF215274	hypothetical protein LOC100260053	-	2e-15	At2g17240	unknown protein	C.G.	S.X.	Please select
0.38	6e-75	280	Zea mays	Zm.7673.1.A1_at	BG320556	hypothetical protein LOC100276580	-	2e-18	At3g24506	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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