Gene omics information

Query gene ID	Contig9578_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	85.5	Contig9578_s_at	Contig9578	-	-	9e-13	At5g64030	dehydration-responsive protein-related	S.X.	H.G.	Please select
0.90	95.7	Contig590_at	Contig590	-	-	1e+0	At4g09840	unknown protein	S.X.	H.G.	Please select
0.82	93.1	HVSMEn0025K09r2_at	HVSMEn0025K09r2	-	-	8e-1	At2g21650	MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)	S.X.	H.G.	Please select
0.80	92.5	Contig3638_at	Contig3638	-	-	7e-9	At5g21090	leucine-rich repeat protein, putative	S.X.	H.G.	Please select
0.75	89.5	Contig4061_at	Contig4061	-	-	2e-2	At4g17670	senescence-associated protein-related	S.X.	H.G.	Please select
0.73	88.7	Contig5976_s_at	Contig5976	-	-	4e-58	At4g39520	GTP-binding protein, putative	S.X.	H.G.	Please select
0.72	87.4	Contig4058_s_at	Contig4058	-	-	2e+0	At5g42070	unknown protein	S.X.	H.G.	Please select
0.70	86.0	Contig6014_at	Contig6014	-	-	5e+0	At5g38540	jacalin lectin family protein	S.X.	H.G.	Please select
0.70	86.0	Contig9239_s_at	Contig9239	-	-	3e-1	At4g00330	CRCK2	S.X.	H.G.	Please select
0.67	84.7	Contig4999_at	Contig4999	-	-	6e-3	At3g22750	protein kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.8	99.2	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.6	96.8	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
4.6	96.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.2	96.3	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	3e-54	212	Contig7681_s_at	Contig7681	-	-	4e-18	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.02	6e-3	42	Contig8375_at	Contig8375	-	-	1e-37	At3g23300	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.01	2e-2	40	Contig8927_at	Contig8927	-	-	2e-8	At5g36890	BGLU42 (BETA GLUCOSIDASE 42)	C.G.	S.X.	Please select
0.02	4e-1	36	Contig16566_at	Contig16566	-	-	3e-9	At3g56080	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.04	4e-1	36	Contig8454_at	Contig8454	-	-	2e-14	At1g33170	dehydration-responsive family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Contig7752_at	Contig7752	-	-	9e-1	At4g18940	cyclic phosphodiesterase, putative	C.G.	S.X.	Please select
0.01	6e+0	32	Contig11867_s_at	Contig11867	-	-	4e-1	At1g03790	SOM (SOMNUS)	C.G.	S.X.	Please select
0.01	6e+0	32	Contig5547_at	Contig5547	-	-	8e-17	At2g17340	pantothenate kinase-related	C.G.	S.X.	Please select
0.01	6e+0	32	Contig14866_at	Contig14866	-	-	7e-4	At1g47570	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	9e-13	75	Arabidopsis thaliana	At5g64030	836524	dehydration-responsive protein-related	F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	2e-14	81	Glycine max	Gma.3716.1.S1_at	BI968899	-	-	1e-39	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.51	0	886	Oryza sativa	Os04g0692400	AK070717.1	-	Putative methyltransferase DUF248 family protein	5e-37	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-36	155	Populus trichocarpa	Ptp.66.1.S1_at	CV228684	hypothetical protein	-	3e-87	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	8e-7	56	Triticum aestivum	Ta.26255.1.S1_at	CD491636	-	-	6e-13	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.26	1e-30	133	Vitis vinifera	1617379_at	CF602961	hypothetical protein LOC100265973	-	5e-24	At5g64030	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.20	6e-18	91	Zea mays	Zm.16771.1.A1_at	AI833437	hypothetical protein LOC100273067	-	6e-21	At2g34300	dehydration-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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