Gene omics information

Query gene ID	Contig9561_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig9561_at	Contig9561	-	-	1e+1	At4g15780	ATVAMP724	S.X.	H.G.	Please select
0.67	84.7	Contig2339_at	Contig2339	-	-	5e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	S.X.	H.G.	Please select
0.61	78.7	Contig17982_at	Contig17982	-	-	2e+1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select
0.55	72.0	HU14G08u_s_at	HU14G08u	-	-	3e-1	At5g38400	unknown protein	S.X.	H.G.	Please select
0.34	43.6	Contig13057_at	Contig13057	-	-	2e+1	At5g20060	phospholipase/carboxylesterase family protein	S.X.	H.G.	Please select
0.33	42.6	Contig12675_s_at	Contig12675	-	-	1e+0	At4g28150	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.6	98.2	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
6.0	97.9	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.4	97.5	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.9	97.1	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.8	95.7	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	Contig22698_at	Contig22698	-	-	1e-1	At5g40855	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	HD11F21r_at	HD11F21r	-	-	9e-1	At2g29452	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	Contig64_at	Contig64	-	-	2e-2	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.01	5e+0	32	Contig7038_at	Contig7038	-	-	2e-8	At1g10280	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig15877_at	Contig15877	-	-	4e-2	At4g17905	ATL4H	C.G.	S.X.	Please select
0.01	5e+0	32	Contig5618_at	Contig5618	NADP-thioredoxin reductase C precursor	-	9e-32	At2g41680	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig5099_at	Contig5099	-	-	7e-13	At5g24420	glucosamine/galactosamine-6-phosphate isomerase-related	C.G.	S.X.	Please select
0.02	5e+0	32	Contig13118_at	Contig13118	-	-	2e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig3203_at	Contig3203	-	-	1e-35	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	32	Arabidopsis thaliana	At4g15780	827258	ATVAMP724	member of VAMP72 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-11	71	Glycine max	Gma.14193.1.A1_at	BU765604	-	-	3e+0	At4g18270	ATTRANS11	C.G.	S.X.	Please select
0.29	6e-58	226	Oryza sativa	Os02g0135900	AK103955.1	-	-	3e+0	At2g32820	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-11	71	Populus trichocarpa	PtpAffx.160282.1.A1_at	CV239898	hypothetical protein	-	5e-11	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.76	2e-164	579	Triticum aestivum	TaAffx.4116.1.S1_at	BE585575	-	-	2e+0	At1g36390	co-chaperone grpE family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1615816_s_at	CF514066	hypothetical protein LOC100243084	-	2e-6	At1g01360	unknown protein	C.G.	S.X.	Please select
0.37	5e-43	174	Zea mays	Zm.7903.1.A1_at	BM347505	hypothetical protein LOC100194285	-	2e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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