Gene omics information

Query gene ID	Contig9550_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.1	Contig9550_at	Contig9550	-	-	3e-1	At4g33690	unknown protein	S.X.	H.G.	Please select
0.68	85.1	Contig4849_s_at	Contig4849	-	-	1e-4	At2g27600	SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)	S.X.	H.G.	Please select
0.57	74.9	HA26O09r_s_at	HA26O09r	-	-	6e+0	At3g52780	PAP20	S.X.	H.G.	Please select
0.53	69.7	Contig2832_s_at	Contig2832	-	-	6e+0	At4g36530	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.51	67.5	Contig10536_at	Contig10536	-	-	3e-2	At2g18250	ATCOAD (4-phosphopantetheine adenylyltransferase)	S.X.	H.G.	Please select
0.49	63.7	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	S.X.	H.G.	Please select
0.46	61.0	rbah36l17_s_at	rbah36l17	-	-	7e-30	At1g30580	GTP binding	S.X.	H.G.	Please select
0.45	59.3	Contig326_x_at	Contig326	-	-	0	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	S.X.	H.G.	Please select
0.41	53.9	Contig5228_s_at	Contig5228	-	-	2e-17	At1g10210	ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1)	S.X.	H.G.	Please select
0.40	53.1	Contig4350_s_at	Contig4350	-	-	2e-85	At2g42790	CSY3 (citrate synthase 3)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	96.8	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.7	92.7	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.5	91.9	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM372989	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.4	91.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.3	90.9	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Contig6058_at	Contig6058	-	-	8e-1	At2g22250	aminotransferase class I and II family protein	C.G.	S.X.	Please select
0.01	6e-1	36	HVSMEb0007M18r2_s_at	HVSMEb0007M18r2	-	-	2e+0	At5g17073	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	36	Contig8768_at	Contig8768	-	-	2e-6	At3g09770	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig3756_at	Contig3756	-	-	4e-31	At3g12860	nucleolar protein Nop56, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Contig2881_s_at	Contig2881	-	-	1e-6	At4g27500	PPI1 (PROTON PUMP INTERACTOR 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig26442_at	Contig26442	-	-	4e+0	At4g35480	RHA3B	C.G.	S.X.	Please select
0.01	2e+0	34	HW06F02u_at	HW06F02u	-	-	1e+1	At5g61590	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig18074_at	Contig18074	-	-	7e+0	At5g53380	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Contig12261_at	Contig12261	-	-	6e-2	At4g19020	CMT2 (chromomethylase 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	38	Arabidopsis thaliana	At4g33690	829511	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	6e+0	34	Glycine max	GmaAffx.90779.1.S1_s_at	CF806504	-	-	2e-8	At5g28050	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please select
0.34	7e-56	220	Oryza sativa	Os05g0279400	AK102650.1	-	Zn-finger, C2H2 type domain containing protein	2e-6	At2g47090	nucleic acid binding / protein binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	6e+0	34	Populus trichocarpa	PtpAffx.57734.1.S1_at	DN486150	-	-	3e-1	At1g56200	emb1303 (embryo defective 1303)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	3e-155	549	Triticum aestivum	TaAffx.78596.1.S1_at	CA730340	-	-	1e+0	At5g44520	ribose 5-phosphate isomerase-related	C.G.	S.X.	Please select
0.01	3e-1	36	Vitis vinifera	1615370_at	CF372878	hypothetical protein LOC100266022	-	6e-2	At4g08330	unknown protein	C.G.	S.X.	Please select
0.06	4e-11	69	Zea mays	Zm.18242.1.S1_at	CN844479	-	-	1e+0	At2g47090	nucleic acid binding / protein binding / zinc ion binding	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage