CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9520_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.54 70.3 Contig9520_at Contig9520 - - 4e-4 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) S.X. H.G.
0.62 79.1 Contig15156_at Contig15156 - - 2e+0 At1g48210 serine/threonine protein kinase, putative S.X. H.G.
0.54 70.3 Contig125_at Contig125 - - 2e+0 At4g25720 QC (GLUTAMINYL CYCLASE) S.X. H.G.
0.48 63.2 Contig21333_at Contig21333 - - 3e-1 At2g43350 ATGPX3 (GLUTATHIONE PEROXIDASE 3) S.X. H.G.
0.48 63.2 Contig14753_at Contig14753 - - 4e-7 At5g38060 unknown protein S.X. H.G.
0.44 58.9 Contig3633_s_at Contig3633 - - 7e-1 At3g13480 unknown protein S.X. H.G.
0.40 53.1 Contig13413_at Contig13413 - - 1e+0 At3g46210 3' exoribonuclease family domain 1-containing protein S.X. H.G.
0.39 50.5 Contig10279_at Contig10279 - - 3e+0 At1g52830 IAA6 (INDOLE-3-ACETIC ACID 6) S.X. H.G.
0.38 49.5 Contig5117_at Contig5117 - - 8e-2 At5g60500 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein S.X. H.G.
0.36 47.1 Contig9013_at Contig9013 - - 4e-20 At1g80230 cytochrome c oxidase family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.1 98.9 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
8.5 98.8 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.9 98.7 GSM282027 Malting_day1_Legacy_rep2 GSE11200 Expression data from malting barley seeds
7.8 98.6 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.8 98.6 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.5 98.6 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.0 98.4 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.7 98.3 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.7 98.3 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
6.5 98.2 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 5e-150 529 Contig9518_at Contig9518 - - 5e+0 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) C.G. S.X.
0.03 1e-2 40 Contig25979_at Contig25979 - - 4e-6 At3g04400 emb2171 (embryo defective 2171) C.G. S.X.
0.03 8e-1 34 Contig16163_at Contig16163 - - 4e-2 At4g25570 ACYB-2 C.G. S.X.
0.01 8e-1 34 Contig15362_at Contig15362 - - 3e+0 At1g79850 RPS17 (RIBOSOMAL PROTEIN S17) C.G. S.X.
0.03 8e-1 34 HB28C15r_at HB28C15r - - 1e+1 At4g12617 unknown protein C.G. S.X.
0.01 8e-1 34 Contig4531_at Contig4531 - - 1e-5 At2g37540 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.03 3e+0 32 Contig19331_at Contig19331 - - 3e+0 At1g67210 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 3e+0 32 Contig11361_at Contig11361 - - 3e-3 At4g30170 peroxidase, putative C.G. S.X.
0.01 3e+0 32 Contig1658_at Contig1658 - - 2e-1 At4g36780 transcription regulator C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 4e-4 46 Arabidopsis thaliana At5g46160 834658 ribosomal protein L14 family protein / huellenlos paralog (HLP) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAF - - - C.G. S.X.
0.03 2e+0 34 Glycine max GmaAffx.85488.1.A1_at BE583659 - - 1e-63 At5g07090 40S ribosomal protein S4 (RPS4B) C.G. S.X.
0.47 4e-135 482 Oryza sativa Os12g0616200 AK059735.1 - HUELLENLOS-like protein 2e-3 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) C.G. S.X.
0.03 6e-1 36 Populus trichocarpa PtpAffx.223981.1.S1_s_at pmrna42208 hypothetical protein - 2e-1 At3g30845 unknown protein C.G. S.X.
0.60 0 868 Triticum aestivum Ta.3141.1.S1_at CK152010 - - 1e-1 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) C.G. S.X.
0.13 3e-2 38 Vitis vinifera 1607838_at CA808902 hypothetical protein LOC100241180 - 1e-28 At5g46160 ribosomal protein L14 family protein / huellenlos paralog (HLP) C.G. S.X.
0.40 1e-91 335 Zea mays Zm.10716.2.A1_at BI359458 50S ribosomal protein L14 - 8e-6 At1g17560 HLL (HUELLENLOS) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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