Gene omics information

Query gene ID	Contig9481_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig9481_at	Contig9481	-	-	2e+0	At5g60830	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	S.X.	H.G.	Please select
0.57	74.9	HVSMEf0003F23r2_at	HVSMEf0003F23r2	-	-	9e-1	At5g09570	-	S.X.	H.G.	Please select
0.50	66.9	Contig8940_s_at	Contig8940	-	-	2e-3	At3g02000	ROXY1	S.X.	H.G.	Please select
0.40	53.1	Contig18600_at	Contig18600	-	-	8e-5	At1g72520	lipoxygenase, putative	S.X.	H.G.	Please select
0.36	47.1	HW03D17u_at	HW03D17u	-	-	4e+0	At5g65300	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig12297_at	Contig12297	-	-	1e+0	At3g13190	myosin heavy chain-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.8	97.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
5.5	97.6	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.3	97.4	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
5.0	97.2	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.5	96.7	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.3	96.4	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	38	Contig13054_at	Contig13054	-	-	1e-17	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select
0.02	5e-2	38	Contig9637_at	Contig9637	-	-	6e-23	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig2607_at	Contig2607	-	-	4e-4	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.01	3e+0	32	Contig10328_at	Contig10328	-	-	4e-2	At5g65380	ripening-responsive protein, putative	C.G.	S.X.	Please select
0.03	3e+0	32	HY03L11u_at	HY03L11u	-	-	9e-1	At2g28820	-	C.G.	S.X.	Please select
0.03	3e+0	32	EBro08_SQ012_H04_at	EBro08_SQ012_H04	-	-	5e-2	At4g13600	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10435_at	Contig10435	-	-	1e+0	At1g71500	Rieske (2Fe-2S) domain-containing protein	C.G.	S.X.	Please select
0.02	1e+1	30	Contig10797_at	Contig10797	-	-	2e-9	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig5532_at	Contig5532	-	-	2e-16	At5g01330	PDC3 (pyruvate decarboxylase-3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g60830	836204	AtbZIP70 (Arabidopsis thaliana basic leucine-zipper 70)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.88610.1.A1_at	CD402446	-	-	2e-1	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select
0.50	1e-95	351	Oryza sativa	Os02g0462900	CF328460	-	Prefoldin beta-like family protein	9e-2	At2g07340	prefoldin-related KE2 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.217709.1.S1_at	pmrna33074	hypothetical protein	-	6e+0	At5g19910	SOH1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	767	Triticum aestivum	Ta.5573.1.S1_at	CK161875	-	-	2e+0	At3g04990	-	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621876_at	BQ798834	hypothetical protein LOC100253321	-	7e-2	At5g50540	unknown protein	C.G.	S.X.	Please select
0.43	2e-65	248	Zea mays	Zm.6115.1.A1_at	CB351082	prefoldin subunit 1	-	4e-1	At4g23070	ATRBL7 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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