Gene omics information

Query gene ID	Contig9459_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig9459_at	Contig9459	-	-	1e-2	At5g54800	GPT1	S.X.	H.G.	Please select
0.83	94.0	Contig376_s_at	Contig376	-	-	5e+0	At1g28135	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HK06B02r_s_at	HK06B02r	-	-	1e-5	At3g43810	CAM7 (CALMODULIN 7)	S.X.	H.G.	Please select
0.50	66.9	Contig5733_at	Contig5733	-	-	2e+0	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	S.X.	H.G.	Please select
0.46	61.0	Contig4131_at	Contig4131	-	-	2e-23	At1g77490	TAPX (THYLAKOIDAL ASCORBATE PEROXIDASE)	S.X.	H.G.	Please select
0.46	61.0	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.9	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.8	97.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8	97.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM372971	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.1	96.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Contig16096_at	Contig16096	-	-	8e+0	At5g62920	ARR6 (RESPONSE REGULATOR 6)	C.G.	S.X.	Please select
0.01	3e-1	36	Contig4346_at	Contig4346	-	-	2e-4	At3g19450	ATCAD4	C.G.	S.X.	Please select
0.02	1e+0	34	Contig23347_at	Contig23347	-	-	9e-8	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig22642_at	Contig22642	-	-	4e+0	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig14088_x_at	Contig14088	-	-	3e-2	At1g76050	pseudouridine synthase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Contig14088_s_at	Contig14088	-	-	3e-2	At1g76050	pseudouridine synthase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12203_at	Contig12203	-	-	2e+0	At5g09530	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	5e+0	32	HV01J02w_at	HV01J02w	-	-	4e+0	At3g58676	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig5347_at	Contig5347	-	-	1e-3	At1g17770	SUVH7 (SU(VAR)3-9 HOMOLOG 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-2	42	Arabidopsis thaliana	At5g54800	835570	GPT1	glucose6-Phosphate/phosphate transporter 1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	HgAffx.9263.1.S1_at	CB379781	-	-	4e+0	At4g02715	unknown protein	C.G.	S.X.	Please select
0.18	3e-44	180	Oryza sativa	Os03g0809700	AK060622.1	-	-	2e-1	At5g19280	KAPP (KINASE ASSOCIATED PROTEIN PHOSPHATASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.8886.1.S1_s_at	BU817264	hypothetical protein	-	6e-10	At5g54800	GPT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	Ta.17556.1.S1_at	CA621791	-	-	7e+0	At3g13550	FUS9 (FUSCA 9)	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1621913_at	CB970039	hypothetical protein LOC100247362	-	5e-15	At3g29090	pectinesterase family protein	C.G.	S.X.	Please select
0.07	8e-14	77	Zea mays	Zm.16584.1.S1_at	U81960.1	kinase associated protein phosphatase	-	3e-1	At1g76930	ATEXT4 (EXTENSIN 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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