CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9452_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 69.7 Contig9452_at Contig9452 - - 4e-28 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein S.X. H.G.
0.73 88.7 Contig9453_at Contig9453 - - 3e-23 At1g26550 peptidyl-prolyl cis-trans isomerase PPIC-type family protein S.X. H.G.
0.53 69.7 Contig15546_at Contig15546 - - 8e-4 At1g69450 - S.X. H.G.
0.19 19.6 Contig16048_at Contig16048 - - 8e-1 At1g24880 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase S.X. H.G.
0.16 15.3 Contig8297_at Contig8297 - - 2e-24 At1g79690 atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3) S.X. H.G.
0.12 10.4 Contig17899_at Contig17899 - - 2e+0 At4g20690 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
24.7 99.8 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.0 99.1 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
6.2 98.0 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.0 97.9 GSM238429 Embryo 16DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.8 97.8 GSM213443 Barley seeds with P. aeruginosa PA5021 mutant for 12hr GSE8618 P. aeruginosa virulent factor to barley
5.5 97.6 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.3 97.4 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM213436 Barley seeds with P. aeruginosa PAO1 for 12hr GSE8618 P. aeruginosa virulent factor to barley
4.3 96.4 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 5e-1 36 ChlorContig3_at ChlorContig3 - - 6e-142 Atcg01110 - C.G. S.X.
0.01 2e+0 34 Contig5422_at Contig5422 - - 1e-39 At1g71830 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) C.G. S.X.
0.01 2e+0 34 Contig18533_at Contig18533 - - 2e-2 At1g49040 SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) C.G. S.X.
0.01 2e+0 34 Contig13156_at Contig13156 - - 3e-6 At1g77122 unknown protein C.G. S.X.
0.01 2e+0 34 Contig6346_at Contig6346 - - 5e+0 At5g59780 MYB59 (MYB DOMAIN PROTEIN 59) C.G. S.X.
0.01 8e+0 32 Contig7102_at Contig7102 - - 2e-73 At5g44635 minichromosome maintenance family protein / MCM family protein C.G. S.X.
0.01 8e+0 32 Contig4516_at Contig4516 - - 5e-11 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
0.01 8e+0 32 Contig15001_at Contig15001 - - 3e-2 At2g34460 flavin reductase-related C.G. S.X.
0.01 8e+0 32 Contig20722_at Contig20722 - - 1e-1 At2g02170 remorin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 4e-28 127 Arabidopsis thaliana At5g19330 832053 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein F:protein binding, binding;P:unknown;C:plasma membrane;MPOFVBA - - - C.G. S.X.
0.14 3e-17 91 Glycine max GmaAffx.42424.1.S1_at AW756256 - - 2e-45 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein C.G. S.X.
0.71 0 1122 Oryza sativa Os05g0398100 9633.m03036 - BTB/POZ domain containing protein 1e-31 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein C.G. S.X.
0.37 2e-33 145 Populus trichocarpa PtpAffx.208793.1.S1_at pmrna17433 hypothetical protein - 1e-157 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein C.G. S.X.
0.50 0 1297 Triticum aestivum Ta.6004.1.S1_at CK209091 - - 2e-10 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1609697_at CF207058.1 Stilbene synthase 4 - 6e-6 At5g13930 TT4 (TRANSPARENT TESTA 4) C.G. S.X.
0.25 1e-112 406 Zea mays Zm.14071.1.A1_at AY109092.1 hypothetical protein LOC100279213 - 2e-16 At5g19330 armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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