Gene omics information

Query gene ID	Contig9449_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.42	55.2	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.55	72.0	Contig12784_at	Contig12784	-	-	2e-10	At1g28520	VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN)	S.X.	H.G.	Please select
0.50	66.9	Contig11977_at	Contig11977	-	-	6e-1	At5g62490	ATHVA22B	S.X.	H.G.	Please select
0.48	63.2	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	S.X.	H.G.	Please select
0.43	56.4	Contig9392_at	Contig9392	-	-	5e+0	At5g62780	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.29	35.5	rbaal22m07_at	rbaal22m07	-	-	2e-1	At1g06440	ubiquitin thiolesterase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.2	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
9.3	99.0	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.1	98.7	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.0	97.2	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.7	96.9	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.3	96.4	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2302	Contig9449_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.60	0	749	Contig9451_at	Contig9451	-	-	8e-2	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig11553_at	Contig11553	-	-	2e-4	At1g15860	-	C.G.	S.X.	Please select
0.02	3e-1	36	Contig4086_at	Contig4086	-	-	6e+0	At3g25716	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7705_at	Contig7705	-	-	1e-11	At3g29200	CM1 (CHORISMATE MUTASE 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7628_at	Contig7628	-	-	3e-12	At5g56840	DNA-binding family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig2501_at	Contig2501	-	-	4e-14	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig18182_at	Contig18182	-	-	4e-4	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	C.G.	S.X.	Please select
0.02	4e+0	32	HVSMEg0011G06r2_at	HVSMEg0011G06r2	-	-	9e-1	At5g52660	myb family transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	3e-18	93	Arabidopsis thaliana	At2g27350	817278	OTU-like cysteine protease family protein	F:cysteine-type peptidase activity;P:biological_process unknown;C:chloroplast;OMPFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-4	48	Glycine max	Gma.7101.1.S1_at	BI471297	-	-	5e-29	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.44	0	747	Oryza sativa	Os04g0414100	AK101471.1	-	Ovarian tumour, otubain domain containing protein	8e-33	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.24	1e-24	115	Populus trichocarpa	PtpAffx.222459.1.S1_s_at	pmrna39874	hypothetical protein	-	8e-50	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.60	0	1667	Triticum aestivum	Ta.28042.1.S1_at	CD454023	-	-	5e-9	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.12	8e-10	63	Vitis vinifera	1612368_at	CF511228	hypothetical protein LOC100246727	-	5e-44	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.47	8e-162	569	Zea mays	Zm.4444.1.S1_at	BE050821	Hypothetical protein LOC100194101	-	3e-16	At2g27350	OTU-like cysteine protease family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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