Gene omics information

Query gene ID	Contig9426_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig9426_at	Contig9426	-	-	2e-2	At5g51340	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig15145_at	Contig15145	-	-	1e-61	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	S.X.	H.G.	Please select
0.91	98.1	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.91	98.1	Contig21454_x_at	Contig21454	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	S.X.	H.G.	Please select
0.83	94.0	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.57	74.9	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.4	97.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.3	96.4	GSM238417	Endosperm 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-3	44	Contig13826_at	Contig13826	-	-	2e-1	At4g02730	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	9e-3	42	Contig4370_at	Contig4370	-	-	3e+0	At5g56760	ATSERAT1	C.G.	S.X.	Please select
0.01	4e-2	40	Contig7936_at	Contig7936	-	-	1e-14	At4g38320	HHP5 (heptahelical protein 5)	C.G.	S.X.	Please select
0.01	4e-2	40	Contig2403_at	Contig2403	-	-	8e-7	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig5475_at	Contig5475	-	-	5e+0	At5g05960	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig3859_s_at	Contig3859	-	-	3e-1	At4g10970	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Contig15263_at	Contig15263	-	-	7e-3	At2g23320	WRKY15	C.G.	S.X.	Please select
0.01	1e-1	38	Contig7260_at	Contig7260	casein kinase II beta	-	1e-17	At4g17640	CKB2	C.G.	S.X.	Please select
0.01	1e-1	38	Contig16877_at	Contig16877	-	-	1e+0	At5g09960	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	42	Arabidopsis thaliana	At5g51340	835208	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e-1	40	Glycine max	GmaAffx.91149.1.S1_at	CF806874	-	-	6e-86	At5g19660	S1P (SITE-1 PROTEASE)	C.G.	S.X.	Please select
0.30	0	773	Oryza sativa	Os04g0347600	AK065410.1	-	TPR-like domain containing protein	1e+0	At2g45440	DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	3e-20	101	Populus trichocarpa	PtpAffx.157124.1.S1_at	CK106225	hypothetical protein	-	3e-11	At5g51340	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	0	1552	Triticum aestivum	TaAffx.121673.1.S1_at	CA728231	-	-	2e-3	At5g51340	unknown protein	C.G.	S.X.	Please select
0.01	5e-3	42	Vitis vinifera	1615474_at	CB978861	-	-	8e-49	At4g39520	GTP-binding protein, putative	C.G.	S.X.	Please select
0.01	1e-1	38	Zea mays	Zm.1754.1.A1_a_at	CF624874	lipid binding protein	-	5e+0	At3g03750	SET domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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