CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9392_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 58.9 Contig9392_at Contig9392 - - 5e+0 At5g62780 DNAJ heat shock N-terminal domain-containing protein S.X. H.G.
0.67 84.7 Contig11977_at Contig11977 - - 6e-1 At5g62490 ATHVA22B S.X. H.G.
0.61 78.7 Contig10592_at Contig10592 - - 1e-2 At5g26180 NOL1/NOP2/sun family protein S.X. H.G.
0.55 72.0 Contig12784_at Contig12784 - - 2e-10 At1g28520 VOZ1 (VASCULAR PLANT ONE ZINC FINGER PROTEIN) S.X. H.G.
0.42 55.2 Contig9449_s_at Contig9449 - - 3e-18 At2g27350 OTU-like cysteine protease family protein S.X. H.G.
0.40 53.1 Contig9752_at Contig9752 - - 3e+0 At2g11651 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
73.0 100.0 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
63.2 100.0 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
39.9 99.9 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
32.8 99.9 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
30.0 99.9 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
27.2 99.8 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
12.6 99.4 GSM238428 Embryo 16DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
11.8 99.3 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
10.5 99.2 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
9.5 99.0 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 3e-27 121 Contig4599_s_at Contig4599 - - 2e-1 At4g36740 ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40) C.G. S.X.
0.10 2e-19 95 HT07M06u_at HT07M06u - - 1e+0 At1g02870 unknown protein C.G. S.X.
0.13 2e-19 95 Contig3315_s_at Contig3315 - - 1e+0 At3g14190 unknown protein C.G. S.X.
0.13 2e-19 95 Contig3315_at Contig3315 - - 1e+0 At3g14190 unknown protein C.G. S.X.
0.12 2e-19 95 Contig3314_at Contig3314 - - 1e+0 At3g14190 unknown protein C.G. S.X.
0.08 5e-17 87 Contig3173_s_at Contig3173 - - 6e+0 At4g05091 unknown protein C.G. S.X.
0.08 5e-17 87 Contig3173_at Contig3173 - - 6e+0 At4g05091 unknown protein C.G. S.X.
0.07 1e-14 79 Contig3175_at Contig3175 - - 2e-3 At1g34750 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.16 4e-11 67 Contig9808_at Contig9808 - - 1e-9 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At5g62780 836399 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;MOPBFAV - - - C.G. S.X.
0.03 1e-1 38 Glycine max GmaAffx.73217.1.S1_at BI784637 - - 9e-94 At5g05620 GCP2 (GAMMA-TUBULIN COMPLEX PROTEIN 2) C.G. S.X.
0.22 4e-45 182 Oryza sativa OsAffx.14523.1.S1_s_at - - - 0 C.G. S.X.
0.04 1e-1 38 Populus trichocarpa PtpAffx.222809.1.S1_at pmrna40474 hypothetical protein - 7e+0 At5g54490 PBP1 (PINOID-BINDING PROTEIN 1) C.G. S.X.
0.48 8e-79 293 Triticum aestivum Ta.5820.1.S1_at CD913737 - - 1e+0 At2g30060 Ran-binding protein 1b (RanBP1b) C.G. S.X.
0.15 9e-5 46 Vitis vinifera 1620436_a_at CB910355 hypothetical protein LOC100261866 - 1e+1 At5g59080 unknown protein C.G. S.X.
0.22 7e-59 226 Zea mays Zm.13655.1.S1_at CF042879 hypothetical protein LOC100279015 - 1e-1 At2g38905 hydrophobic protein, putative / low temperature and salt responsive protein, putative C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage