CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9377_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.1 Contig9377_at Contig9377 - - 4e-27 At4g26300 emb1027 (embryo defective 1027) S.X. H.G.
0.53 69.7 Contig7995_at Contig7995 - - 2e-3 At4g28180 unknown protein S.X. H.G.
0.44 58.9 Contig14572_at Contig14572 - - 3e-5 At4g21410 protein kinase family protein S.X. H.G.
0.43 56.4 HX08J20r_at HX08J20r - - 2e+0 At4g15920 - S.X. H.G.
0.40 53.1 Contig7512_s_at Contig7512 - - 3e-7 At5g12970 C2 domain-containing protein S.X. H.G.
0.38 49.5 Contig16313_at Contig16313 - - 1e-1 At1g35170 - S.X. H.G.
0.17 16.9 HX08J20r_s_at HX08J20r - - 2e+0 At4g15920 - S.X. H.G.
0.14 12.9 Contig1386_s_at Contig1386 - - 3e+0 At4g23080 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 98.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.1 98.4 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.6 98.2 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM282026 Malting_day1_Legacy_rep4 GSE11200 Expression data from malting barley seeds
5.3 97.4 GSM238435 Embryo 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.0 97.2 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.8 97.0 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.8 97.0 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
4.4 96.6 GSM238436 Embryo 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Contig1063_s_at Contig1063 - - 1e-74 At1g31340 RUB1 (RELATED TO UBIQUITIN 1) C.G. S.X.
0.02 1e+0 34 rbags23l17_at rbags23l17 - - 9e-2 At1g59940 ARR3 (RESPONSE REGULATOR 3) C.G. S.X.
0.01 1e+0 34 Contig10424_at Contig10424 - - 2e-14 At3g49350 RAB GTPase activator C.G. S.X.
0.02 1e+0 34 Contig18049_at Contig18049 - - 5e-4 At4g21065 - C.G. S.X.
0.02 1e+0 34 Contig13017_at Contig13017 - - 5e+0 At5g19172 - C.G. S.X.
0.01 1e+0 34 Contig5891_at Contig5891 - - 4e+0 At3g25870 unknown protein C.G. S.X.
0.02 5e+0 32 HV_CEa0006M06r2_s_at HV_CEa0006M06r2 - - 4e+0 At1g18250 ATLP-1 C.G. S.X.
0.01 5e+0 32 Contig12730_at Contig12730 - - 2e+0 At3g59640 glycine-rich protein C.G. S.X.
0.02 5e+0 32 Contig25262_at Contig25262 - - 1e+0 At5g44150 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 4e-27 123 Arabidopsis thaliana At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV - - - C.G. S.X.
0.12 3e-10 67 Glycine max Gma.10893.1.S1_at BE659457 arginyl-tRNA synthetase - 7e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.55 0 1055 Oryza sativa Os05g0163000 AK066161.1 - Arginyl-tRNA synthetase, class Ic family protein 2e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.15 2e-5 52 Populus trichocarpa Ptp.1743.1.A1_a_at CV271562 hypothetical protein - 3e-45 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.68 0 2183 Triticum aestivum Ta.2176.1.S1_at CK206562 - - 1e-25 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1622214_at BQ794441 similar to NADH-ubiquinone oxidoreductase-related - 5e-43 At3g62790 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.51 1e-145 515 Zea mays Zm.7543.1.A1_at CD997722 hypothetical protein LOC100192002 - 4e-6 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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