Gene omics information

Query gene ID	Contig9357_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig9357_at	Contig9357	-	-	2e-42	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	S.X.	H.G.	Please select
0.55	72.0	rbasd11p06_s_at	rbasd11p06	-	-	4e+0	At3g17609	HYH (HY5-HOMOLOG)	S.X.	H.G.	Please select
0.50	66.9	Contig8204_at	Contig8204	-	-	2e+0	At1g30070	SGS domain-containing protein	S.X.	H.G.	Please select
0.44	58.9	Contig5533_at	Contig5533	-	-	2e-7	At4g33070	pyruvate decarboxylase, putative	S.X.	H.G.	Please select
0.22	24.2	Contig10276_at	Contig10276	-	-	8e-44	At2g34850	MEE25 (maternal effect embryo arrest 25)	S.X.	H.G.	Please select
0.05	4.1	Contig7391_at	Contig7391	-	-	2e-25	At5g42000	ORMDL family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	97.7	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.5	97.6	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
5.1	97.3	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.1	97.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
4.8	97.0	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
4.7	96.9	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
4.7	96.9	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	4e-54	212	Contig14714_at	Contig14714	P-type ATPase	-	3e-68	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please select
0.10	3e-15	83	Contig11449_at	Contig11449	-	-	9e-29	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please select
0.08	4e-14	79	Contig14075_at	Contig14075	-	-	6e-33	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please select
0.03	6e-10	65	Contig9475_at	Contig9475	-	-	1e-33	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	C.G.	S.X.	Please select
0.05	6e-10	65	Contig25293_at	Contig25293	-	-	5e-52	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.02	2e-3	44	Contig6173_at	Contig6173	-	-	2e-36	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.02	1e-1	38	Contig8728_at	Contig8728	-	-	2e-36	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig10125_s_at	Contig10125	-	-	8e-2	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig10126_at	Contig10126	-	-	9e-2	At4g30067	LCR63 (Low-molecular-weight cysteine-rich 63)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-42	174	Arabidopsis thaliana	At1g27770	839670	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-84	313	Glycine max	Gma.1178.1.S1_a_at	AF195029.1	plasma membrane Ca2+-ATPase	-	2e-74	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.48	0	1667	Oryza sativa	Os12g0586600	AK100436.1	-	Plasma membrane Ca2+-ATPase	2e-59	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.31	1e-96	355	Populus trichocarpa	Ptp.1858.1.S1_at	BU812732	hypothetical protein	-	8e-71	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	0	1449	Triticum aestivum	Ta.23482.1.A1_at	CA747193	-	-	2e-12	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.28	1e-65	250	Vitis vinifera	1613557_at	BM436858	-	-	4e-66	At4g37640	ACA2 (CALCIUM ATPASE 2)	C.G.	S.X.	Please select
0.17	1e-57	224	Zea mays	Zm.8105.1.A1_at	BM379418	-	-	1e-3	At4g37640	ACA2 (CALCIUM ATPASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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