Gene omics information

Query gene ID	Contig9332_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig9332_at	Contig9332	-	-	6e+0	At3g01470	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	S.X.	H.G.	Please select
0.67	84.7	Contig4748_s_at	Contig4748	ribophorin I	-	2e-2	At1g76400	ribophorin I family protein	S.X.	H.G.	Please select
0.55	72.0	Contig4413_s_at	Contig4413	-	-	7e+0	At2g40790	ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)	S.X.	H.G.	Please select
0.55	72.0	Contig4750_at	Contig4750	-	-	4e+0	At5g15360	unknown protein	S.X.	H.G.	Please select
0.53	69.7	HU09E20u_s_at	HU09E20u	-	-	3e+0	At3g55820	-	S.X.	H.G.	Please select
0.27	32.1	Contig10818_at	Contig10818	-	-	1e-2	At1g47970	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.3	99.4	GSM311249	28-4_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
8.9	98.9	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.6	98.8	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
8.2	98.7	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.5	98.6	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.4	98.5	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
7.3	98.5	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.8	98.3	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.5	98.2	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4	98.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	0	960	Contig9333_s_at	Contig9333	-	-	2e-4	At1g72050	TFIIIA (TRANSCRIPTION FACTOR IIIA)	C.G.	S.X.	Please select
0.50	0	960	Contig9333_at	Contig9333	-	-	2e-4	At1g72050	TFIIIA (TRANSCRIPTION FACTOR IIIA)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig1206_s_at	Contig1206	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.03	7e-1	34	HVSMEg0015E17r2_at	HVSMEg0015E17r2	-	-	8e-1	At2g25120	bromo-adjacent homology (BAH) domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24970_at	Contig24970	-	-	2e+0	At5g36190	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig12706_at	Contig12706	-	-	7e+0	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig14236_at	Contig14236	-	-	2e-8	At2g26430	RCY1 (ARGININE-RICH CYCLIN 1)	C.G.	S.X.	Please select
0.03	3e+0	32	EBro03_SQ002_D18_at	EBro03_SQ002_D18	-	-	1e+1	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig25423_at	Contig25423	-	-	2e+0	At2g17340	pantothenate kinase-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At3g01470	821138	ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)	Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.266.1.S1_at	AI440537	-	-	9e+0	At4g05091	unknown protein	C.G.	S.X.	Please select
0.09	3e-6	54	Oryza sativa	Os02g0116000	AK100473.1	-	The start codon is not identified.	2e+0	At1g72050	TFIIIA (TRANSCRIPTION FACTOR IIIA)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	8e-3	42	Populus trichocarpa	PtpAffx.152437.1.S1_s_at	CV254283	hypothetical protein	-	1e-69	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.69	1e-133	476	Triticum aestivum	Ta.8493.1.A1_at	CD908713	-	-	1e+0	At5g02840	LCL1 (LHY/CCA1-like 1)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1615244_at	BQ799114	-	-	4e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.32	3e-15	81	Zea mays	Zm.10587.1.A1_at	AY107155.1	hypothetical protein LOC100216772	-	4e-1	At5g40720	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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