Gene omics information

Query gene ID	Contig9248_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig9248_s_at	Contig9248	-	-	1e+0	At3g15110	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig13988_at	Contig13988	-	-	5e-4	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.67	84.7	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig1056_s_at	Contig1056	-	-	5e-140	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.50	66.9	Contig12434_at	Contig12434	-	-	2e-6	At4g30930	NFD1 (NUCLEAR FUSION DEFECTIVE 1)	S.X.	H.G.	Please select
0.43	56.4	Contig9200_at	Contig9200	-	-	6e-1	At5g10230	ANNAT7 (ANNEXIN ARABIDOPSIS 7)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.1	99.7	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
17.3	99.6	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
15.5	99.6	GSM71153	Barke stress and unstress replicate 4	GSE3170	Barley single feature polymorphisms and drought stress gene expression
15.3	99.6	GSM71151	Barke stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
15.3	99.6	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.7	99.5	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.7	99.5	GSM71139	OWB-D stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
14.2	99.5	GSM71140	OWB-D stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
13.5	99.5	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
13.4	99.4	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	991	Contig9249_at	Contig9249	-	-	1e+0	At3g15110	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	36	Contig3713_s_at	Contig3713	-	-	3e-10	At4g33510	DHS2 (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase)	C.G.	S.X.	Please select
0.02	5e-1	34	Contig18215_at	Contig18215	-	-	5e-14	At3g22190	IQD5 (IQ-domain 5)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig6001_at	Contig6001	-	-	7e-45	At2g42490	copper amine oxidase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8508_at	Contig8508	-	-	1e-4	At5g58250	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig17628_at	Contig17628	-	-	8e-1	At1g05960	binding	C.G.	S.X.	Please select
0.02	2e+0	32	Contig6082_at	Contig6082	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig11161_s_at	Contig11161	-	-	3e+0	At5g07572	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5283_at	Contig5283	-	-	1e-2	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g15110	820741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	PsAffx.CL2381Contig1_at	PsAffx.CL2381Contig1	-	-	3e+0	At3g13882	structural constituent of ribosome	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	Os06g0545100	9634.m03339	-	-	4e+0	At1g14225	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e+0	32	Populus trichocarpa	PtpAffx.5173.1.A1_at	CV258663	hypothetical protein	-	4e-6	At3g06470	GNS1/SUR4 membrane family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	7e-5	48	Triticum aestivum	TaAffx.28383.1.S1_at	CA660875	-	-	4e+0	At1g35880	-	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1617440_at	CF373136	hypothetical protein LOC100247017	-	8e-2	At5g61470	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.16202.1.A1_s_at	BE050781	hypothetical protein LOC100276821	-	1e+0	At3g10810	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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