CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9224_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.85 94.5 Contig9224_at Contig9224 - - 1e-38 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) S.X. H.G.
0.26 30.4 Contig9223_at Contig9223 - - 2e+0 At4g13450 universal stress protein (USP) family protein S.X. H.G.
0.26 30.4 HVSMEl0003K07r2_at HVSMEl0003K07r2 - - 3e-1 At1g03106 unknown protein S.X. H.G.
0.23 26.1 Contig16601_at Contig16601 - - 3e+0 At2g40070 - S.X. H.G.
0.17 16.9 Contig6326_at Contig6326 - - 6e-7 At5g45130 RHA1 (RAB HOMOLOG 1) S.X. H.G.
0.14 12.9 Contig15807_at Contig15807 - - 2e-9 At1g79610 sodium proton exchanger, putative (NHX6) S.X. H.G.
0.13 11.6 Contig8707_s_at Contig8707 - - 6e-4 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) S.X. H.G.
0.11 9.4 Contig8028_at Contig8028 - - 7e-14 At4g21470 ATFMN/FHY (riboflavin kinase/FMN hydrolase) S.X. H.G.
0.10 8.4 Contig11890_at Contig11890 - - 4e-5 At4g21580 oxidoreductase, zinc-binding dehydrogenase family protein S.X. H.G.
0.06 4.8 Contig16227_at Contig16227 - - 4e-1 At4g29770 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.0 97.9 GSM261046 after 3 days in mannitol medium rep2 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.9 97.9 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.6 97.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1 97.3 GSM146365 Maythorpe Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0 96.0 GSM146359 Golden Promise Root Control, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6 95.3 GSM146368 Maythorpe Root Salt, biological rep 3 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.3 94.6 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
3.3 94.6 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.3 94.6 GSM440958 Control lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.1 94.1 GSM160823 19% SWC rep1 GSE6990 Barley drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.53 8e-171 599 HA03B13u_s_at HA03B13u - - 8e-4 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.53 8e-171 599 HA03B13u_at HA03B13u - - 8e-4 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.33 8e-23 107 Contig9022_at Contig9022 - - 2e-55 At5g37680 ATARLA1A (ADP-ribosylation factor-like A1A) C.G. S.X.
0.02 9e-1 34 Contig19722_at Contig19722 - - 3e-2 At2g37210 - C.G. S.X.
0.01 9e-1 34 Contig13478_at Contig13478 - - 6e-1 At5g47700 60S acidic ribosomal protein P1 (RPP1C) C.G. S.X.
0.01 9e-1 34 Contig7447_at Contig7447 - - 2e-7 At4g10790 UBX domain-containing protein C.G. S.X.
0.02 9e-1 34 Contig5814_at Contig5814 - - 2e-2 At4g30330 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative C.G. S.X.
0.02 9e-1 34 Contig18801_at Contig18801 - - 2e+0 At3g63233 unknown protein C.G. S.X.
0.02 9e-1 34 Contig6936_at Contig6936 - - 2e+0 At4g22950 AGL19 (AGAMOUS-LIKE 19) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 1e-38 161 Arabidopsis thaliana At3g49870 824149 ATARLA1C (ADP-ribosylation factor-like A1C) A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. - - - C.G. S.X.
0.33 1e-57 224 Glycine max Gma.7813.2.S1_at BE660328 - - 6e-76 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.49 0 730 Oryza sativa Os03g0200800 AK112007.1 - - 5e-35 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.29 7e-44 178 Populus trichocarpa Ptp.625.1.S1_at CK087324 hypothetical protein - 4e-60 At3g49870 ATARLA1C (ADP-ribosylation factor-like A1C) C.G. S.X.
0.82 0 1336 Triticum aestivum Ta.8631.1.S1_at CA690636 - - 8e-28 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.33 8e-59 226 Vitis vinifera 1619019_at CF213490 hypothetical protein LOC100243336 - 2e-102 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
0.54 7e-134 476 Zea mays Zm.14791.1.A1_at CF628382 ADP-ribosylation factor-like protein 8B - 7e-9 At5g67560 ATARLA1D (ADP-ribosylation factor-like A1D) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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