Gene omics information

Query gene ID	Contig9215_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	56.4	Contig9215_at	Contig9215	-	-	8e-16	At5g26360	chaperonin, putative	S.X.	H.G.	Please select
0.63	80.3	Contig14187_at	Contig14187	-	-	1e+0	At3g11773	electron carrier/ protein disulfide oxidoreductase	S.X.	H.G.	Please select
0.46	61.0	Contig15230_at	Contig15230	-	-	2e-11	At5g59430	TRP1 (TELOMERIC REPEAT BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.44	58.9	Contig1522_at	Contig1522	-	-	2e-1	At3g44935	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig7396_at	Contig7396	-	-	2e+0	At1g73165	CLE1 (CLAVATA3/ESR-RELATED 1)	S.X.	H.G.	Please select
0.31	38.6	Contig1965_at	Contig1965	-	-	1e-13	At1g55510	BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT)	S.X.	H.G.	Please select
0.23	26.1	Contig9214_at	Contig9214	-	-	5e-1	At2g05990	MOD1 (MOSAIC DEATH 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.8	98.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.7	98.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.6	98.2	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.4	98.1	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
6.4	98.1	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.8	97.8	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Contig12793_at	Contig12793	-	-	6e+0	At5g39580	peroxidase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8209_at	Contig8209	-	-	1e+0	At1g76760	ATY1 (ARABIDOPSIS THIOREDOXIN Y1)	C.G.	S.X.	Please select
0.02	1e+0	34	HV_CEb0002K12r2_x_at	HV_CEb0002K12r2	-	-	2e+0	At2g40650	pre-mRNA splicing factor PRP38 family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig18314_at	Contig18314	-	-	7e-1	At4g26965	NADH:ubiquinone oxidoreductase family protein	C.G.	S.X.	Please select
0.02	5e+0	32	HW09H22u_at	HW09H22u	-	-	1e+0	At4g13230	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig2205_s_at	Contig2205	-	-	1e-76	At5g61410	RPE	C.G.	S.X.	Please select
0.01	5e+0	32	Contig10959_at	Contig10959	-	-	4e-37	At4g09630	-	C.G.	S.X.	Please select
0.02	5e+0	32	rbah58n17_s_at	rbah58n17	-	-	1e+0	At1g77855	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig7986_at	Contig7986	-	-	9e-2	At2g26830	emb1187 (embryo defective 1187)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	8e-16	85	Arabidopsis thaliana	At5g26360	832705	chaperonin, putative	F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	1e-27	125	Glycine max	Gma.6692.1.S1_at	AW309658	-	-	4e-101	At5g26360	chaperonin, putative	C.G.	S.X.	Please select
0.51	0	734	Oryza sativa	Os02g0247200	AK102024.1	-	T-complex protein 1, gamma subunit (TCP-1-gamma)(CCT-gamma) (Matricin)	6e-73	At5g26360	chaperonin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	6e-42	173	Populus trichocarpa	Ptp.715.2.A1_at	CV271211	hypothetical protein	-	8e-80	At5g26360	chaperonin, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	0	1990	Triticum aestivum	Ta.2554.1.S1_x_at	CK210349	-	-	1e-46	At5g26360	chaperonin, putative	C.G.	S.X.	Please select
0.25	2e-41	169	Vitis vinifera	1610737_at	CB346253	hypothetical protein LOC100255417	-	7e-49	At5g26360	chaperonin, putative	C.G.	S.X.	Please select
0.47	0	876	Zea mays	Zm.16810.1.A1_at	CF053948	T-complex protein 1 subunit gamma	-	3e-32	At5g26360	chaperonin, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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