CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9200_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 87.1 Contig9200_at Contig9200 - - 6e-1 At5g10230 ANNAT7 (ANNEXIN ARABIDOPSIS 7) S.X. H.G.
0.61 78.7 Contig1056_s_at Contig1056 - - 5e-140 At4g05050 UBQ11 (UBIQUITIN 11) S.X. H.G.
0.50 66.9 Contig9642_at Contig9642 - - 1e-13 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) S.X. H.G.
0.46 61.0 Contig6616_at Contig6616 - - 1e-57 At4g35260 IDH1 (ISOCITRATE DEHYDROGENASE 1) S.X. H.G.
0.46 61.0 Contig12434_at Contig12434 - - 2e-6 At4g30930 NFD1 (NUCLEAR FUSION DEFECTIVE 1) S.X. H.G.
0.44 58.9 Contig13988_at Contig13988 - - 5e-4 At4g24020 NLP7 (NIN LIKE PROTEIN 7) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.4 99.9 GSM431568 pathogen isolates: Mock inoculated control - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
28.2 99.8 GSM431550 pathogen isolates: Polymyxa graminis - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
23.8 99.8 GSM431570 pathogen isolates: Mock inoculated control - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
23.8 99.8 GSM431571 pathogen isolates: Polymyxa betae - rep1 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
18.8 99.7 GSM431573 pathogen isolates: Polymyxa betae - rep3 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
18.6 99.7 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
16.1 99.6 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.0 99.5 GSM431551 pathogen isolates: Polymyxa graminis - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
13.9 99.5 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.7 99.4 GSM431546 pathogen isolates: Mock - rep1 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-5 48 Contig26515_at Contig26515 - - 2e+1 At5g41992 CPuORF58 (Conserved peptide upstream open reading frame 58) C.G. S.X.
0.02 3e-4 46 Contig17413_at Contig17413 - - 2e+0 At3g20570 plastocyanin-like domain-containing protein C.G. S.X.
0.01 2e-2 40 Contig12945_at Contig12945 - - 8e-17 At5g50400 PAP27 (PURPLE ACID PHOSPHATASE 27) C.G. S.X.
0.03 2e-2 40 Contig3350_at Contig3350 - - 5e-2 At5g10220 ANN6 (ANNEXIN ARABIDOPSIS 6) C.G. S.X.
0.02 8e-2 38 EBro08_SQ003_A06_at EBro08_SQ003_A06 - - 1e+0 At2g32190 unknown protein C.G. S.X.
0.02 8e-2 38 HVSMEn0016D01r2_at HVSMEn0016D01r2 - - 3e-1 At2g30560 glycine-rich protein C.G. S.X.
0.01 8e-2 38 Contig1247_s_at Contig1247 - - 7e-4 At2g39050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 8e-2 38 Contig1247_at Contig1247 - - 7e-4 At2g39050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 3e-1 36 Contig23909_at Contig23909 - - 4e+0 At3g56250 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At5g10230 830887 ANNAT7 (ANNEXIN ARABIDOPSIS 7) Encodes a calcium-binding protein annexin (AnnAt7). - - - C.G. S.X.
0.02 6e-2 40 Glycine max Gma.3440.1.S1_s_at BE820653 - - 5e+0 At5g67010 AP2 domain-containing transcription factor, putative C.G. S.X.
0.63 0 793 Oryza sativa Os05g0382600 AK060054.1 - Annexin family protein 6e-1 At5g10230 ANNAT7 (ANNEXIN ARABIDOPSIS 7) C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.200142.1.S1_at pmrna265 hypothetical protein - 9e-2 At5g12380 annexin, putative C.G. S.X.
0.78 0 1655 Triticum aestivum Ta.25635.1.S1_at CD373671 - - 2e-1 At1g74660 MIF1 (MINI ZINC FINGER 1) C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1616738_at CB917799 - - 2e-2 At1g22210 trehalose-6-phosphate phosphatase, putative C.G. S.X.
0.39 2e-48 192 Zea mays Zm.17977.1.A1_at CK827616 - - 5e-1 At3g09630 60S ribosomal protein L4/L1 (RPL4A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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