Gene omics information

Query gene ID	Contig91_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig91_at	Contig91	-	-	2e-67	At4g24190	SHD (SHEPHERD)	S.X.	H.G.	Please select
0.44	58.9	Contig4066_at	Contig4066	-	-	1e-4	At4g17670	senescence-associated protein-related	S.X.	H.G.	Please select
0.40	53.1	HW01P03u_s_at	HW01P03u	-	-	8e+0	At5g35470	unknown protein	S.X.	H.G.	Please select
0.38	49.5	HVSMEn0019L21f_at	HVSMEn0019L21f	-	-	4e+0	At1g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.33	42.6	Contig6339_s_at	Contig6339	-	-	2e+0	At1g14450	unknown protein	S.X.	H.G.	Please select
0.33	42.6	Contig3445_at	Contig3445	-	-	3e-3	At5g38470	DNA repair protein RAD23, putative	S.X.	H.G.	Please select
0.27	32.1	Contig5946_at	Contig5946	-	-	2e+0	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	S.X.	H.G.	Please select
0.18	18.2	Contig11906_at	Contig11906	-	-	2e+0	At5g15910	dehydrogenase-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.6	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
14.3	99.5	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.1	99.3	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.5	99.3	GSM372947	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.0	99.2	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.5	99.2	GSM372944	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.5	99.2	GSM372946	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.1	99.1	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
9.7	99.0	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
8.8	98.9	GSM282027	Malting_day1_Legacy_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	1142	Contig416_x_at	Contig416	-	-	5e-29	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.31	5e-156	551	Contig71_s_at	Contig71	GRP94 homologue	-	1e-9	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.16	7e-143	508	Contig568_s_at	Contig568	GRP94 homologue	-	4e-2	At1g06240	unknown protein	C.G.	S.X.	Please select
0.05	4e-33	143	HB24L05r_at	HB24L05r	-	-	3e-1	At2g19680	mitochondrial ATP synthase g subunit family protein	C.G.	S.X.	Please select
0.05	1e-30	135	Contig20013_at	Contig20013	-	-	2e-2	At4g17440	unknown protein	C.G.	S.X.	Please select
0.03	9e-16	85	EBro08_SQ012_P22_at	EBro08_SQ012_P22	-	-	1e-2	At1g07340	ATSTP2 (SUGAR TRANSPORTER 2)	C.G.	S.X.	Please select
0.10	2e-10	67	Contig1206_s_at	Contig1206	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	C.G.	S.X.	Please select
0.01	3e-3	44	Contig22083_at	Contig22083	-	-	2e+0	At5g65480	unknown protein	C.G.	S.X.	Please select
0.02	3e-3	44	Contig25388_at	Contig25388	-	-	5e-6	At2g19790	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	2e-67	258	Arabidopsis thaliana	At4g24190	828520	SHD (SHEPHERD)	encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	2e-34	149	Glycine max	Gma.18032.1.S1_at	BG650211	-	-	3e-56	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.73	0	1663	Oryza sativa	Os06g0716700	AK063385.1	-	Endoplasmin homolog precursor (GRP94 homolog)	2e-67	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.21	2e-46	188	Populus trichocarpa	PtpAffx.98826.1.S1_s_at	CX653746	hypothetical protein	-	2e-96	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	2208	Triticum aestivum	Ta.28735.1.S1_a_at	BJ250459	-	-	5e-50	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.20	2e-30	133	Vitis vinifera	1610896_at	CF204993.1	hypothetical protein LOC100267648	-	4e-75	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.69	0	1459	Zea mays	Zm.5048.3.S1_x_at	AY103537.1	hypothetical protein LOC100279926	-	3e-57	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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