Gene omics information

Query gene ID	Contig9144_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig9144_at	Contig9144	-	-	1e-15	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	S.X.	H.G.	Please select
0.77	90.8	HU11B09u_s_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	S.X.	H.G.	Please select
0.67	84.7	HU11B09u_at	HU11B09u	-	-	5e-3	At4g20010	PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE 9)	S.X.	H.G.	Please select
0.44	58.9	Contig14921_s_at	Contig14921	-	-	3e+0	At4g38370	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.42	55.2	Contig14296_at	Contig14296	-	-	4e+0	At1g07140	SIRANBP	S.X.	H.G.	Please select
0.31	38.6	Contig12950_at	Contig12950	-	-	3e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.4	99.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
18.4	99.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
13.9	99.5	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
11.5	99.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
11.5	99.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
11.4	99.3	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
7.4	98.5	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
7.4	98.5	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
7.3	98.5	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
7.3	98.5	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Contig5654_at	Contig5654	-	-	9e-59	At4g08900	arginase	C.G.	S.X.	Please select
0.01	5e-1	36	Contig8212_at	Contig8212	-	-	2e-1	At3g61970	NGA2 (NGATHA2)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig7911_at	Contig7911	-	-	2e-4	At4g28400	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	5e-1	36	HF18A22r_s_at	HF18A22r	-	-	9e-8	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig9841_at	Contig9841	-	-	4e-2	At1g72310	ATL3	C.G.	S.X.	Please select
0.01	5e-1	36	Contig6993_at	Contig6993	-	-	1e-19	At4g01370	ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4)	C.G.	S.X.	Please select
0.01	5e-1	36	Contig1459_at	Contig1459	-	-	1e-14	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig6310_at	Contig6310	-	-	1e-1	At2g41260	M17	C.G.	S.X.	Please select
0.01	2e+0	34	Contig11580_at	Contig11580	-	-	3e-4	At3g08040	FRD3 (FERRIC REDUCTASE DEFECTIVE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-15	85	Arabidopsis thaliana	At3g20860	821634	ATNEK5 (NIMA-RELATED KINASE5)	Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	38	Glycine max	GmaAffx.2736.1.S1_at	BE057231	PHD2	-	2e-11	At5g26210	AL4 (ALFIN-LIKE 4)	C.G.	S.X.	Please select
0.40	4e-128	460	Oryza sativa	Os02g0590800	AK060204.1	-	Protein kinase domain containing protein	1e-12	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e-7	59	Populus trichocarpa	PtpAffx.86377.1.S1_at	CX174012	hypothetical protein	-	3e-20	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.72	0	2109	Triticum aestivum	Ta.6856.1.S1_at	BT009517.1	-	-	2e-4	At3g20860	ATNEK5 (NIMA-RELATED KINASE5)	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1622105_x_at	CF203247.1	-	-	6e-1	At5g38300	unknown protein	C.G.	S.X.	Please select
0.09	1e-16	87	Zea mays	Zm.4414.1.A1_at	AY111432.1	serine/threonine-protein kinase Nek4	-	6e+0	At5g20180	ribosomal protein L36 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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