Gene omics information

Query gene ID	Contig9136_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	S.X.	H.G.	Please select
0.43	56.4	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.40	53.1	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig12938_at	Contig12938	-	-	1e+0	At1g36920	unknown protein	S.X.	H.G.	Please select
0.35	45.1	HVSMEa0009I06r2_at	HVSMEa0009I06r2	-	-	9e+0	At5g59060	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.8	GSM261068	Albina f-17 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.5	98.6	GSM160815	drought control rep3	GSE6990	Barley drought stress
7.2	98.5	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
6.6	98.2	GSM261069	Albina f-17 Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.6	97.7	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
5.4	97.5	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.1	97.3	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
4.7	96.9	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.6	96.8	GSM160744	drought control rep2	GSE6990	Barley drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	Contig6807_at	Contig6807	-	-	8e-19	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig24019_at	Contig24019	-	-	4e+0	At2g02520	-	C.G.	S.X.	Please select
0.02	3e-1	36	Contig17201_at	Contig17201	-	-	5e-1	At5g53850	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.02	1e+0	34	HU14M19u_s_at	HU14M19u	-	-	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11479_s_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig11479_at	Contig11479	-	-	9e-3	At4g25770	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	HU14M19u_at	HU14M19u	-	-	3e+0	At1g74060	60S ribosomal protein L6 (RPL6B)	C.G.	S.X.	Please select
0.01	5e+0	32	Contig4992_at	Contig4992	-	-	5e-9	At1g79440	ALDH5F1	C.G.	S.X.	Please select
0.01	5e+0	32	Contig4096_at	Contig4096	-	-	5e-70	At3g45300	IVD (ISOVALERYL-COA-DEHYDROGENASE)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-5	52	Arabidopsis thaliana	At3g51140	824278	-	F:unknown;P:biological_process unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;BPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	38	Glycine max	Gma.6940.1.A1_at	CA784222	-	-	5e+0	At2g39320	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.55	0	726	Oryza sativa	Os03g0255200	AK071625.1	-	-	1e-2	At3g51140	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-14	81	Populus trichocarpa	PtpAffx.207400.1.S1_at	pmrna14687	hypothetical protein	-	9e-17	At3g51140	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	3e-120	432	Triticum aestivum	Ta.7946.1.A1_at	BQ161000	-	-	4e+0	At5g39790	5'-AMP-activated protein kinase beta-1 subunit-related	C.G.	S.X.	Please select
0.12	5e-14	77	Vitis vinifera	1617601_at	CF208695	similar to heat shock protein binding	-	1e-12	At3g51140	-	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	ZmAffx.1147.1.A1_at	AW400224	-	-	6e-1	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage