CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9113_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 92.5 Contig9113_s_at Contig9113 - - 2e-26 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related S.X. H.G.
0.61 78.7 Contig8122_at Contig8122 - - 4e-2 At1g66950 PDR11 (PLEIOTROPIC DRUG RESISTANCE 11) S.X. H.G.
0.53 69.7 Contig10154_at Contig10154 - - 4e-45 At2g41540 GPDHC1 S.X. H.G.
0.46 61.0 Contig24268_at Contig24268 - - 2e+0 At5g57345 unknown protein S.X. H.G.
0.44 58.9 Contig11154_at Contig11154 - - 1e-15 At5g66210 CPK28 S.X. H.G.
0.40 53.1 Contig12027_at Contig12027 ORG4 - 2e-3 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) S.X. H.G.
0.38 49.5 HVSMEn0011A10f_x_at HVSMEn0011A10f - - 2e+0 At3g47990 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.6 99.0 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.9 98.3 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
5.1 97.3 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.4 96.6 GSM146379 Maythorpe shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.0 96.0 GSM146375 Maythorpe shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9 95.8 GSM146373 Golden Promise shoot Salt, biological rep 2 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8 95.7 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
3.7 95.5 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7 95.5 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.7 95.5 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 4278 Contig9113_at Contig9113 - - 2e-26 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.36 0 811 HS17G19u_at HS17G19u - - 2e-2 At1g77940 60S ribosomal protein L30 (RPL30B) C.G. S.X.
0.01 3e-2 40 Contig8752_at Contig8752 - - 1e-7 At5g67420 LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) C.G. S.X.
0.01 5e-1 36 Contig6438_s_at Contig6438 - - 6e-1 At2g44581 protein binding / zinc ion binding C.G. S.X.
0.01 5e-1 36 Contig16998_at Contig16998 - - 4e-13 At5g04870 CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) C.G. S.X.
0.01 5e-1 36 Contig7906_at Contig7906 - - 3e-3 At4g37880 protein binding / zinc ion binding C.G. S.X.
0.01 5e-1 36 Contig1327_at Contig1327 - - 1e-94 At3g43810 CAM7 (CALMODULIN 7) C.G. S.X.
0.01 2e+0 34 EBem05_SQ004_I01_at EBem05_SQ004_I01 - - 4e+0 At4g30460 glycine-rich protein C.G. S.X.
0.01 2e+0 34 Contig8262_at Contig8262 - - 2e-1 At3g15800 glycosyl hydrolase family 17 protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-26 121 Arabidopsis thaliana At5g11980 831071 conserved oligomeric Golgi complex component-related / COG complex component-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP - - - C.G. S.X.
0.12 3e-17 91 Glycine max GmaAffx.47025.1.S1_at BM892182 - - 6e-27 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.63 0 1689 Oryza sativa Os12g0538300 AK067402.1 - Dor1-like protein family protein 6e-21 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.02 4e-1 38 Populus trichocarpa PtpAffx.203717.1.S1_s_at pmrna7353 hypothetical protein - 9e-1 At5g57240 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) C.G. S.X.
0.79 0 1479 Triticum aestivum Ta.5090.1.S1_x_at CK168310 - - 4e-25 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1618145_at CF515449 hypothetical protein LOC100260419 - 3e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.38 4e-103 375 Zea mays Zm.5123.1.A1_at BM348091 hypothetical protein LOC100273962 - 2e-1 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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