CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig9113_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig9113_at Contig9113 - - 2e-26 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related S.X. H.G.
0.50 66.9 Contig12544_at Contig12544 - - 2e+1 At5g03100 F-box family protein S.X. H.G.
0.50 66.9 Contig7625_at Contig7625 - - 4e-1 At5g36659 - S.X. H.G.
0.46 61.0 Contig23795_at Contig23795 - - 1e+1 At5g49220 unknown protein S.X. H.G.
0.44 58.9 Contig742_at Contig742 - - 4e-3 At1g48920 ATNUC-L1 S.X. H.G.
0.38 49.5 Contig16514_at Contig16514 - - 1e+0 At2g01590 CRR3 (CHLORORESPIRATORY REDUCTION 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.3 99.8 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
12.3 99.4 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
10.9 99.2 GSM215730 Control (DMSO) treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
10.7 99.2 GSM215728 gibberellin treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.8 97.0 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
4.1 96.2 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
3.9 95.8 GSM419973 Lemma_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
3.9 95.8 GSM440958 Control lemma_Rep2 GSE17669 Gene expression in the barley spike during drought stress
3.4 94.8 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.3 94.6 GSM213441 Barley seeds control in Hoagland solution for 12hr GSE8618 P. aeruginosa virulent factor to barley
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 4278 Contig9113_s_at Contig9113 - - 2e-26 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.36 0 811 HS17G19u_at HS17G19u - - 2e-2 At1g77940 60S ribosomal protein L30 (RPL30B) C.G. S.X.
0.01 3e-2 40 Contig8752_at Contig8752 - - 1e-7 At5g67420 LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) C.G. S.X.
0.01 5e-1 36 Contig6438_s_at Contig6438 - - 6e-1 At2g44581 protein binding / zinc ion binding C.G. S.X.
0.01 5e-1 36 Contig16998_at Contig16998 - - 4e-13 At5g04870 CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) C.G. S.X.
0.01 5e-1 36 Contig7906_at Contig7906 - - 3e-3 At4g37880 protein binding / zinc ion binding C.G. S.X.
0.01 5e-1 36 Contig1327_at Contig1327 - - 1e-94 At3g43810 CAM7 (CALMODULIN 7) C.G. S.X.
0.01 2e+0 34 EBem05_SQ004_I01_at EBem05_SQ004_I01 - - 4e+0 At4g30460 glycine-rich protein C.G. S.X.
0.01 2e+0 34 Contig8262_at Contig8262 - - 2e-1 At3g15800 glycosyl hydrolase family 17 protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-26 121 Arabidopsis thaliana At5g11980 831071 conserved oligomeric Golgi complex component-related / COG complex component-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP - - - C.G. S.X.
0.12 3e-17 91 Glycine max GmaAffx.47025.1.S1_at BM892182 - - 6e-27 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.63 0 1689 Oryza sativa Os12g0538300 AK067402.1 - Dor1-like protein family protein 6e-21 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.02 4e-1 38 Populus trichocarpa PtpAffx.203717.1.S1_s_at pmrna7353 hypothetical protein - 9e-1 At5g57240 ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) C.G. S.X.
0.79 0 1479 Triticum aestivum Ta.5090.1.S1_x_at CK168310 - - 4e-25 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
0.02 2e-2 40 Vitis vinifera 1618145_at CF515449 hypothetical protein LOC100260419 - 3e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein C.G. S.X.
0.38 4e-103 375 Zea mays Zm.5123.1.A1_at BM348091 hypothetical protein LOC100273962 - 2e-1 At5g11980 conserved oligomeric Golgi complex component-related / COG complex component-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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