Gene omics information

Query gene ID	Contig901_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	61.0	Contig901_x_at	Contig901	-	-	0	At1g56070	LOS1	S.X.	H.G.	Please select
0.50	66.9	HD08D07r_s_at	HD08D07r	-	-	9e+0	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.33	42.6	Contig7278_at	Contig7278	-	-	7e-2	At2g45980	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig9154_at	Contig9154	-	-	7e-1	At4g39340	unknown protein	S.X.	H.G.	Please select
0.15	14.1	Contig6874_at	Contig6874	-	-	8e+0	At5g14360	ubiquitin family protein	S.X.	H.G.	Please select
0.14	12.9	Contig10064_at	Contig10064	-	-	2e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.0	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
6.2	98.0	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.6	95.3	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.1	94.1	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	3957	Contig413_s_at	Contig413	-	-	0	At1g56070	LOS1	C.G.	S.X.	Please select
0.85	0	3885	Contig685_at	Contig685	-	-	0	At1g56070	LOS1	C.G.	S.X.	Please select
0.68	0	2722	Contig1003_at	Contig1003	-	-	0	At1g56070	LOS1	C.G.	S.X.	Please select
0.44	0	1441	Contig827_x_at	Contig827	-	-	8e-86	At1g56070	LOS1	C.G.	S.X.	Please select
0.33	0	1082	Contig331_x_at	Contig331	-	-	8e-39	At1g56070	LOS1	C.G.	S.X.	Please select
0.44	0	1013	Contig536_at	Contig536	-	-	2e-68	At1g56070	LOS1	C.G.	S.X.	Please select
0.32	0	841	Contig297_s_at	Contig297	-	-	5e-59	At1g56070	LOS1	C.G.	S.X.	Please select
0.22	4e-138	492	HS08C03u_at	HS08C03u	-	-	1e+1	Atcg00580	-	C.G.	S.X.	Please select
0.15	2e-130	466	Contig626_x_at	Contig626	-	-	4e-16	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	1191	Arabidopsis thaliana	At1g56070	842058	LOS1	encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.69	0	864	Glycine max	Gma.10782.1.S1_at	CD410674	-	-	0	At1g56070	LOS1	C.G.	S.X.	Please select
0.78	0	2839	Oryza sativa	Os02g0519900	AK100313.1	-	Elongation factor EF-2 (Fragment)	0	At1g56070	LOS1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.71	0	1302	Populus trichocarpa	PtpAffx.205282.1.S1_at	pmrna10471	hypothetical protein	-	0	At1g56070	LOS1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.84	0	3798	Triticum aestivum	Ta.28016.1.S1_x_at	BJ250194	-	-	0	At1g56070	LOS1	C.G.	S.X.	Please select
0.39	0	686	Vitis vinifera	1615787_at	BQ797242	similar to elongation factor 2	-	2e-168	At1g56070	LOS1	C.G.	S.X.	Please select
0.75	0	2456	Zea mays	Zm.14407.2.S1_at	AW424519	hypothetical protein LOC100272648	-	3e-140	At1g56070	LOS1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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