Gene omics information

Query gene ID	Contig9006_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	63.2	Contig9006_at	Contig9006	-	-	6e-5	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	S.X.	H.G.	Please select
0.33	42.6	HD01O20w_at	HD01O20w	-	-	5e+0	At4g22520	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.29	35.5	HU13P05r_at	HU13P05r	-	-	1e+0	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	S.X.	H.G.	Please select
0.19	19.6	HVSMEb0014K09r2_s_at	HVSMEb0014K09r2	-	-	2e+0	At4g21215	unknown protein	S.X.	H.G.	Please select
0.16	15.3	Contig21959_at	Contig21959	-	-	1e+0	At1g12663	-	S.X.	H.G.	Please select
0.09	7.4	HT12C11u_at	HT12C11u	-	-	1e+0	At2g01870	unknown protein	S.X.	H.G.	Please select
0.05	4.1	HS18B10u_x_at	HS18B10u	-	-	7e+0	At4g01750	RGXT2 (rhamnogalacturonan xylosyltransferase 2)	S.X.	H.G.	Please select
0.04	3.4	HVSMEm0003G18r2_at	HVSMEm0003G18r2	-	-	9e-1	At1g09665	Toll-Interleukin-Resistance (TIR) domain-containing protein	S.X.	H.G.	Please select
0.03	2.6	Contig13558_at	Contig13558	-	-	2e-1	At2g36270	ABI5 (ABA INSENSITIVE 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.9	99.9	GSM440973	Stressed awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
29.2	99.9	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
29.1	99.9	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
27.2	99.8	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
25.4	99.8	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
25.0	99.8	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
23.8	99.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
23.4	99.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
22.8	99.8	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.6	99.6	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	6e-173	607	HV10A20u_s_at	HV10A20u	-	-	3e+0	At3g25233	unknown protein	C.G.	S.X.	Please select
0.34	6e-173	607	HV10A20u_at	HV10A20u	-	-	3e+0	At3g25233	unknown protein	C.G.	S.X.	Please select
0.14	2e-71	270	HU09D05u_at	HU09D05u	-	-	1e+0	At4g08073	unknown protein	C.G.	S.X.	Please select
0.02	5e-7	56	Contig3900_at	Contig3900	-	-	5e-2	At2g27420	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	5e-7	56	Contig6776_s_at	Contig6776	-	-	2e-3	At1g20850	XCP2 (xylem cysteine peptidase 2)	C.G.	S.X.	Please select
0.06	5e-7	56	Contig4091_at	Contig4091	-	-	3e-13	At1g47128	RD21 (responsive to dehydration 21)	C.G.	S.X.	Please select
0.01	4e-4	46	Contig2988_s_at	Contig2988	-	-	2e-1	At2g18670	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	7e-3	42	Contig7594_at	Contig7594	-	-	4e-9	At4g34490	ATCAP1 (ARABIDOPSIS THALIANA CYCLASE ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.02	7e-3	42	Contig12361_at	Contig12361	-	-	5e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	6e-5	50	Arabidopsis thaliana	At1g09850	837517	XBCP3 (xylem bark cysteine peptidase 3)	Arabidopsis thaliana papain-like cysteine peptidase	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-3	44	Glycine max	HgAffx.18175.1.S1_at	CB238519	-	-	4e+0	At5g20090	unknown protein	C.G.	S.X.	Please select
0.57	0	773	Oryza sativa	Os05g0508300	9633.m04018	-	Papain-like cysteine peptidase XBCP3	9e-4	At1g47128	RD21 (responsive to dehydration 21)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-6	56	Populus trichocarpa	PtpAffx.224491.1.S1_at	pmrna43075	hypothetical protein	-	8e-19	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	0	650	Triticum aestivum	TaAffx.131344.1.S1_at	CA650752	-	-	2e-7	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	C.G.	S.X.	Please select
0.10	1e-6	54	Vitis vinifera	1614318_at	CF515686	hypothetical protein LOC100243729	-	6e-3	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	C.G.	S.X.	Please select
0.21	4e-69	262	Zea mays	Zm.1692.1.A1_at	AW681262	-	-	1e-7	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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