Gene omics information

Query gene ID	Contig9005_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	81.4	Contig9005_at	Contig9005	-	-	1e-14	At3g05280	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.49	63.7	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	S.X.	H.G.	Please select
0.37	47.9	Contig14361_at	Contig14361	-	-	2e-1	At2g11005	glycine-rich protein	S.X.	H.G.	Please select
0.36	47.1	Contig1159_s_at	Contig1159	-	-	1e-4	At1g62540	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	S.X.	H.G.	Please select
0.36	47.1	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	S.X.	H.G.	Please select
0.35	45.1	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	S.X.	H.G.	Please select
0.33	42.6	Contig8331_s_at	Contig8331	-	-	2e-5	At1g55255	-	S.X.	H.G.	Please select
0.31	38.6	Contig6232_at	Contig6232	-	-	8e-1	At2g01720	ribophorin I family protein	S.X.	H.G.	Please select
0.30	37.0	Contig5960_at	Contig5960	-	-	1e-16	At3g18880	ribosomal protein S17 family protein	S.X.	H.G.	Please select
0.30	37.0	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
5.7	97.7	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.6	96.8	GSM372945	genotype: Mla6 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM372966	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.9	95.8	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-2	38	Contig2722_at	Contig2722	-	-	2e-32	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7919_at	Contig7919	-	-	6e-23	At4g01690	PPOX	C.G.	S.X.	Please select
0.02	1e+0	34	rbaal1i09_at	rbaal1i09	-	-	8e-1	At4g27900	-	C.G.	S.X.	Please select
0.01	1e+0	34	Contig12444_at	Contig12444	-	-	4e-20	At1g09530	PIF3 (PHYTOCHROME INTERACTING FACTOR 3)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig7362_at	Contig7362	-	-	5e-8	At5g08590	SNRK2.1 (SNF1-RELATED PROTEIN KINASE 2.1)	C.G.	S.X.	Please select
0.02	1e+0	34	Contig6636_at	Contig6636	-	-	4e-11	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig4148_s_at	Contig4148	-	-	3e-6	At1g07750	cupin family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Contig4555_at	Contig4555	-	-	4e-12	At3g63470	scpl40 (serine carboxypeptidase-like 40)	C.G.	S.X.	Please select
0.02	5e+0	32	Contig3285_at	Contig3285	-	-	4e-1	At2g40240	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	1e-14	81	Arabidopsis thaliana	At3g05280	819692	integral membrane Yip1 family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	GmaAffx.55521.2.S1_at	BM523654	-	-	6e-5	At1g15020	thioredoxin family protein	C.G.	S.X.	Please select
0.61	0	819	Oryza sativa	Os01g0610500	AK105469.1	-	Conserved hypothetical protein	1e-14	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	2e-1	38	Populus trichocarpa	PtpAffx.675.5.S1_at	CF227425	hypothetical protein	-	4e-45	At5g27490	integral membrane Yip1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	7e-118	424	Triticum aestivum	Ta.7590.2.S1_a_at	CK215141	-	-	9e-8	At5g27490	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.07	8e-4	44	Vitis vinifera	1619947_at	BQ794365	hypothetical protein LOC100266603	-	5e-6	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.63	0	660	Zea mays	Zm.3919.1.S1_at	BG840867	hypothetical protein LOC100194180	-	7e-16	At3g05280	integral membrane Yip1 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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