Gene omics information

Query gene ID	Contig8972_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig8972_at	Contig8972	-	-	8e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	S.X.	H.G.	Please select
0.60	77.3	Contig19484_at	Contig19484	-	-	3e-2	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	S.X.	H.G.	Please select
0.60	77.3	Contig5857_s_at	Contig5857	-	-	2e-1	At1g02965	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig12827_at	Contig12827	-	-	8e-1	At2g27470	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	S.X.	H.G.	Please select
0.33	42.6	Contig11731_at	Contig11731	-	-	2e-10	At3g02450	cell division protein ftsH, putative	S.X.	H.G.	Please select
0.33	42.6	HVSMEi0002I06r2_x_at	HVSMEi0002I06r2	-	-	3e+0	At3g02220	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	99.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.4	97.5	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.4	97.5	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
5.1	97.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.9	97.1	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.8	97.0	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.6	96.8	GSM71152	Barke stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2635	Contig8972_s_at	Contig8972	-	-	8e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please select
0.64	0	823	Contig8973_at	Contig8973	-	-	5e-10	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please select
0.01	8e-2	38	Contig12257_at	Contig12257	-	-	2e-34	At5g51070	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig21185_at	Contig21185	-	-	4e-1	At3g24710	-	C.G.	S.X.	Please select
0.02	1e+0	34	Contig26451_at	Contig26451	-	-	3e+0	At5g02580	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Contig17572_at	Contig17572	-	-	9e-1	At2g24440	selenium binding	C.G.	S.X.	Please select
0.01	1e+0	34	Contig6300_at	Contig6300	-	-	1e+0	At4g09260	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	HX10L20r_s_at	HX10L20r	-	-	9e-1	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	C.G.	S.X.	Please select
0.02	5e+0	32	Contig26369_at	Contig26369	-	-	4e+0	At4g02620	vacuolar ATPase subunit F family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	8e-10	65	Arabidopsis thaliana	At3g47930	823948	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	L-Galactono-1,4-lactone dehydrogenase, catalyzes the final step of ascorbate biosynthesis	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	4e-12	73	Glycine max	Gma.3523.1.S1_at	BM270896	-	-	1e-19	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please select
0.50	0	644	Oryza sativa	Os11g0143500	AK102697.1	-	L-Galactono-1,4-lactone dehydrogenase	3e-13	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	2e-32	141	Populus trichocarpa	Ptp.7178.1.S1_at	CV242798	hypothetical protein	-	3e-53	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	1863	Triticum aestivum	Ta.23051.1.A1_a_at	CK154103	-	-	4e-19	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please select
0.03	5e-2	38	Vitis vinifera	1621429_at	CB971575	-	-	1e+0	At5g60560	F-box family protein	C.G.	S.X.	Please select
0.51	0	813	Zea mays	Zm.18087.1.A1_at	CK985875	-	-	5e-18	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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