Gene omics information

Query gene ID	Contig8951_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig8951_at	Contig8951	-	-	9e-4	At4g00090	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.60	77.3	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	S.X.	H.G.	Please select
0.55	72.0	Contig10104_at	Contig10104	-	-	1e-16	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	S.X.	H.G.	Please select
0.40	53.1	Contig1159_s_at	Contig1159	-	-	1e-4	At1g62540	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	S.X.	H.G.	Please select
0.40	53.1	Contig21572_at	Contig21572	-	-	5e-1	At5g48655	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.33	42.6	Contig6232_at	Contig6232	-	-	8e-1	At2g01720	ribophorin I family protein	S.X.	H.G.	Please select
0.23	26.1	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	99.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.2	99.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.8	99.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.3	98.5	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
7.3	98.5	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.6	98.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.2	98.0	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	9e-101	367	HVSMEf0010D24f2_x_at	HVSMEf0010D24f2	-	-	2e+0	At5g44110	POP1	C.G.	S.X.	Please select
0.02	3e-2	40	Contig4257_at	Contig4257	-	-	5e-4	At4g02450	glycine-rich protein	C.G.	S.X.	Please select
0.01	3e-2	40	Contig651_at	Contig651	-	-	2e-20	At4g31990	ASP5 (ASPARTATE AMINOTRANSFERASE 5)	C.G.	S.X.	Please select
0.01	3e-2	40	Contig9661_at	Contig9661	-	-	1e-1	At1g79975	-	C.G.	S.X.	Please select
0.02	1e-1	38	Contig17913_at	Contig17913	-	-	2e+0	At2g39780	RNS2 (RIBONUCLEASE 2)	C.G.	S.X.	Please select
0.01	1e-1	38	Contig10065_at	Contig10065	-	-	3e+0	Atmg01260	-	C.G.	S.X.	Please select
0.01	4e-1	36	Contig4992_at	Contig4992	-	-	5e-9	At1g79440	ALDH5F1	C.G.	S.X.	Please select
0.02	4e-1	36	Contig2097_at	Contig2097	-	-	2e-95	At5g02960	40S ribosomal protein S23 (RPS23B)	C.G.	S.X.	Please select
0.01	4e-1	36	Contig12275_at	Contig12275	-	-	3e-3	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	9e-4	46	Arabidopsis thaliana	At4g00090	828179	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:unknown;C:endomembrane system;MBFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-2	42	Glycine max	GmaAffx.87839.1.S1_at	BQ629424	-	-	1e-9	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.55	0	902	Oryza sativa	Os03g0858400	AK102968.1	-	WD40-like domain containing protein	2e-1	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-13	77	Populus trichocarpa	PtpAffx.80799.4.A1_at	CV277551	hypothetical protein	-	7e-68	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	0	1632	Triticum aestivum	Ta.11617.1.S1_at	CD917841	-	-	8e-1	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1613565_at	CD798133	-	-	4e+0	At5g62720	integral membrane HPP family protein	C.G.	S.X.	Please select
0.50	2e-141	502	Zea mays	Zm.3827.1.S1_at	CA829504	-	-	4e-3	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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