Gene omics information

Query gene ID	Contig8882_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig8882_at	Contig8882	-	-	4e-2	At3g59680	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig7590_at	Contig7590	-	-	7e-1	At1g55580	LAS (Lateral Suppressor)	S.X.	H.G.	Please select
0.67	84.7	Contig10686_at	Contig10686	-	-	4e-8	At4g24180	-	S.X.	H.G.	Please select
0.67	84.7	Contig13161_at	Contig13161	-	-	8e-1	At5g51760	AHG1 (ABA-hypersensitive germination 1)	S.X.	H.G.	Please select
0.61	78.7	Contig17213_at	Contig17213	-	-	1e+0	At2g44110	MLO15 (MILDEW RESISTANCE LOCUS O 15)	S.X.	H.G.	Please select
0.57	74.9	Contig5234_at	Contig5234	-	-	5e-11	At1g09140	SF2/ASF-like splicing modulator (SRP30)	S.X.	H.G.	Please select
0.52	68.3	Contig7592_at	Contig7592	-	-	5e-1	At1g54217	Expressed protein	S.X.	H.G.	Please select
0.52	68.3	Contig9785_at	Contig9785	-	-	9e-4	At4g25620	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.48	63.2	Contig24555_at	Contig24555	-	-	1e+0	At2g45070	SEC61 BETA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
4.2	96.3	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
4.2	96.3	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
3.7	95.5	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.7	95.5	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.6	95.3	GSM440974	Stressed awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
3.5	95.1	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-40	167	Contig4441_at	Contig4441	-	-	1e-1	At4g39890	AtRABH1c (Arabidopsis Rab GTPase homolog H1c)	C.G.	S.X.	Please select
0.11	5e-18	91	HY03O07u_at	HY03O07u	-	-	3e+0	At2g25344	LCR14 (Low-molecular-weight cysteine-rich 14)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig1648_at	Contig1648	-	-	3e-18	At1g66200	ATGSR2	C.G.	S.X.	Please select
0.01	7e-2	38	Contig11070_at	Contig11070	-	-	2e-1	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	C.G.	S.X.	Please select
0.02	3e-1	36	Contig17974_at	Contig17974	-	-	2e-3	At2g24550	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Contig9031_at	Contig9031	-	-	2e-4	At5g18270	ANAC087	C.G.	S.X.	Please select
0.02	3e-1	36	Contig24413_at	Contig24413	-	-	1e+1	At5g23411	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig24290_at	Contig24290	-	-	3e-4	At3g50550	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Contig19338_at	Contig19338	-	-	4e-8	At5g10480	PAS2 (PASTICCINO 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	40	Arabidopsis thaliana	At3g59680	825137	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.85644.1.A1_at	CA938743	-	-	6e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.11	1e-18	95	Oryza sativa	Os11g0112800	AK120247.1	-	Saposin-like type B, 1 domain containing protein	2e+0	At5g01800	saposin B domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e-2	42	Populus trichocarpa	PtpAffx.148150.1.S1_at	AJ769346	hypothetical protein	-	3e-8	At3g57910	D111/G-patch domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.80	0	1164	Triticum aestivum	Ta.7014.2.S1_at	CK216110	-	-	3e+0	At3g29350	AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2)	C.G.	S.X.	Please select
0.03	3e-3	42	Vitis vinifera	1610812_at	CD801696	hypothetical protein LOC100257302	-	5e-13	At1g54580	ACP2 (ACYL CARRIER PROTEIN 2)	C.G.	S.X.	Please select
0.28	6e-39	161	Zea mays	Zm.3738.1.S1_at	BM334767	hypothetical protein LOC100191896	-	6e-1	At2g13770	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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