CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig8829_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.75 89.5 Contig8829_at Contig8829 - - 1e-1 At1g18210 calcium-binding protein, putative S.X. H.G.
0.43 56.4 Contig4337_at Contig4337 - - 5e-5 At1g14540 anionic peroxidase, putative S.X. H.G.
0.40 53.1 Contig3559_at Contig3559 - - 1e-86 At1g24510 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative S.X. H.G.
0.38 49.5 Contig8826_at Contig8826 - - 4e+0 At3g58830 haloacid dehalogenase (HAD) superfamily protein S.X. H.G.
0.35 45.1 Contig6471_at Contig6471 - - 7e+0 At5g41570 WRKY24 S.X. H.G.
0.33 42.6 Contig4603_at Contig4603 - - 3e+0 At5g28630 glycine-rich protein S.X. H.G.
0.33 42.6 HX03D08u_s_at HX03D08u - - 6e-1 At1g04960 - S.X. H.G.
0.32 40.3 Contig7742_at Contig7742 - - 5e-1 At1g29330 ERD2 (ENDOPLASMIC RETICULUM RETENTION DEFECTIVE 2) S.X. H.G.
0.32 40.3 Contig6376_at Contig6376 - - 1e-10 At5g09900 EMB2107 (EMBRYO DEFECTIVE 2107) S.X. H.G.
0.29 35.5 HS05E04u_s_at HS05E04u - - 4e-3 At5g35590 PAA1 (PROTEASOME ALPHA SUBUNIT A 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.1 99.7 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
18.9 99.7 GSM261071 Albina f-17 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.4 99.6 GSM261072 Albina f-17 Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
15.3 99.6 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
11.3 99.3 GSM215729 gibberellin plus Yariv-reagent treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
9.8 99.1 GSM261047 after 3 days in mannitol medium rep3 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.4 99.0 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
7.9 98.7 GSM440966 Stressed palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
7.2 98.5 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
6.9 98.3 GSM215732 gibberellin plus Yariv-reagent treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 3e-59 228 Contig14555_s_at Contig14555 - - 2e-2 At1g73630 calcium-binding protein, putative C.G. S.X.
0.06 4e-9 61 Contig17335_at Contig17335 - - 2e+0 At2g39320 OTU-like cysteine protease family protein C.G. S.X.
0.09 2e-8 59 Contig16091_at Contig16091 - - 4e-2 At3g03750 SET domain-containing protein C.G. S.X.
0.10 2e-5 50 Contig11806_at Contig11806 - - 1e-4 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.06 6e-5 48 Contig5761_s_at Contig5761 - - 2e+0 At5g20650 COPT5 C.G. S.X.
0.02 6e-5 48 Contig7549_at Contig7549 - - 3e-3 At1g18210 calcium-binding protein, putative C.G. S.X.
0.12 4e-3 42 Contig5941_at Contig5941 - - 5e-1 At5g01080 beta-galactosidase C.G. S.X.
0.05 4e-3 42 Contig12590_at Contig12590 - - 2e+0 At3g49570 LSU3 (RESPONSE TO LOW SULFUR 3) C.G. S.X.
0.11 1e-2 40 Contig1324_at Contig1324 - - 4e-1 At3g22930 calmodulin, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 38 Arabidopsis thaliana At1g18210 838401 calcium-binding protein, putative F:calcium ion binding;P:biological_process unknown;C:plasma membrane, vacuole;MFPOB - - - C.G. S.X.
0.05 2e-1 38 Glycine max Gma.15500.1.S1_at CA852986 - - 2e-13 At3g07490 AGD11 (ARF-GAP domain 11) C.G. S.X.
0.40 4e-111 402 Oryza sativa Os05g0380900 AK067214.1 - Calcium-binding EF-hand domain containing protein 2e+0 At5g66090 unknown protein C.G. S.X.
0.02 2e-1 38 Populus trichocarpa PtpAffx.216873.1.S1_at pmrna31918 hypothetical protein - 2e+0 At2g32100 OFP16 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16) C.G. S.X.
0.29 3e-48 192 Triticum aestivum Ta.13803.1.S1_x_at CA498188 - - 3e-2 At1g73630 calcium-binding protein, putative C.G. S.X.
0.03 9e-6 50 Vitis vinifera 1619084_at CA814653 hypothetical protein LOC100264572 - 9e-3 At5g37770 TCH2 (TOUCH 2) C.G. S.X.
0.37 8e-78 289 Zea mays Zm.10480.1.S1_at BM332553 polcalcin Jun o 2 - 2e+0 At4g08230 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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